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Inoculation effects of growthpromoting bacteria on corn root architecture: influence of nitrogen levels, bacterial populations, and plant genotypes

ABSTRACT

Inoculating corn with diazotrophic bacteria as growth promoters has been demonstrated to be an efficient agricultural practice in Brazil, mainly due to the root stimulation they provide to plants. This study investigates the corn (Zea mays L.) root architecture in a greenhouse assay where A. baldaniorum Sp245 and H. seropedicae ZAE94 strains were inoculated and evaluated for 22 days under two N levels: 0.6 and 6 mmol L-1 of N. Short-term bioassays were conducted to assess the plant’s response to the addition of indole-acetic acid, two bacterial populations, and two corn genotypes, utilizing image capture software WinRhizo Pro. The growth and distribution of tips, crossing, and length of fine roots were determined to be the most sensitive aspects to inoculation and indole-acetic acid induction. These responses were influenced by the genotype and the number of bacterial cells present. Biomass accumulation analyses quantified these modifications after a 22-day period. Additionally, the growth response was found to be more significant when applying the Hs-ZAE94 strain to plants fertilized with a higher dose of nitrogen (6.0 mmol L-1), and this response was positively correlated with bioassay data. Selected strains used as an inoculant can improve root architecture and, consequently, the N use efficiency.

Keywords
plant-bacteria interaction; diazotrophs; phytohormones

INTRODUCTION

Corn (Zea mays L.) forms a complex root system during growth and the structure and functionality also change to supply the plant with water and nutrients (Hochholdinger et al., 2018Hochholdinger F, Marcon C, Baldauf JA, Yu P, Frey FP. Proteomics of maize root development. Front Plant Sci. 2018;5:9:143. https://doi.org/10.3389/fpls.2018.00143
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). Growth initiates with the primary root (PR) elongation and the recurrent branching along the main axis from lateral roots (LR). The root architecture (RA) is based on the LR formation and subsequent formation of seminar roots (SR), which is the last one, the second embryonic root type formed after the primary root (Hochholdinger and Tuberosa, 2009Hochholdinger F, Tuberosa R. Genetic and genomic dissection of maize root development and architecture. Curr Opin Plant Sci. 2009;12:172-7. https://doi.org/10.1016/j.pbi.2008.12.002
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). Corn forms a variable number of SR that emerge from the scutellar node about a week after germination (Feldman, 1994Feldman L. The maize root. In: Freeling M, Walbot V, editors. The maize handbook. New York: Springer; 1994. p. 29-37. https://doi.org/10.1007/978-1-4612-2694-9_4
https://doi.org/10.1007/978-1-4612-2694-...
). The root branching occurs through the formation of the LR, allowing them to expand laterally into the soil, and these lateral growth divides into several new ones, providing developmental plasticity (Motte and Beeckman, 2019Motte H, Beeckman T. The evolution of root branching: increasing the level of plasticity. J Exp Bot. 2019;70:785-93. https://doi.org/10.1093/jxb/ery409
https://doi.org/10.1093/jxb/ery409...
), changing soil conditions and nutrient acquisition (Motte et al., 2019Motte H, Vanneste S, Beeckman T. Molecular and environmental regulation of root development. Ann Rev Plant Biol. 2019;70:465-88. https://doi.org/10.1146/annurev-arplant-050718-100423
https://doi.org/10.1146/annurev-arplant-...
). In cereals, communication at the root–soil interface is facilitated by a structure called rhizosheath, which contains tightly bound soil particles associated with root-hair-bearing roots and rhizobacteria (Mccully, 1995Mccully ME. How Do Real Roots Work? (Some new views of root structure). Plant Physiol. 1995;109:1-6. https://doi.org/10.1104/pp.109.1.1
https://doi.org/10.1104/pp.109.1.1...
).

The root shape depends on PR elongation and the number and length of the LRs during growth. Regulation of RA involves the action of plant hormones and auxins and cytokinins are the central molecules involved in this process (Dubrovsky and Forbe, 2012Dubrovsky JG, Forde BG. Quantitative analysis of lateral root development: Pitfalls and how to avoid them. Plant Cell. 2012;24:4-14. https://doi.org/10.1105/tpc.111.089698
https://doi.org/10.1105/tpc.111.089698...
; Orman-Ligeza et al., 2013Orman-Ligeza B, Parizot B, Gantet PP, Beekman T, Bennett MJ, Draye X. Post-embryonic root organogenesis in cereals: branching out from model plants. Trends Plant Sci. 2013;18:459-67. https://doi.org/10.1016/j.tplants.2013.04.010
https://doi.org/10.1016/j.tplants.2013.0...
); being the auxins responsible for PR elongation and LR formation (Alarcón et al., 2019Alarc�n MV, Salguero J, Lloret PG. Auxin modulated initiation of lateral roots is linked to pericycle cell length in maize. Front Plant Sci. 2019;10:11. https://doi.org/10.3389/fpls.2019.00011
https://doi.org/10.3389/fpls.2019.00011...
). Although several genes and pathways are involved in this hormone production in plants (Barbez et al., 2017Barbez E, D�nser K, Gaidora A, Lendl T, Bush W. Auxin steers root cell expansion via apoplastic pH regulation in Arabidopsis thaliana. Proc Natl Acad Sci. 2017;114:E4884-93. https://doi.org/10.1073/pnas.1613499114
https://doi.org/10.1073/pnas.1613499114...
), bacteria associated with roots can also play an important role in RA development (Cassán et al., 2014Cass�n F, Vanderleyden J, Spaepen S. Physiological and agronomical aspects of phytohormone production by model plant-bacteria-promoting rhizobacteria (PGPR) belonging to the genus Azospirillum. J Plant Growth Regul. 2014;33:440-59. https://doi.org/10.1007/s00344-013-9362-4
https://doi.org/10.1007/s00344-013-9362-...
), and the magnitude of both sources of auxin is needed at low levels for positive stimuli.

Azospirillum genus was described in 1980 and started with two species, Azospirillum lipoferum and A. brasilense (Tarrand et al., 1978Tarrand JJ, Krieg NR, D�bereiner J. A taxonomic study of the Spirillum lipoferum group, with descriptions of a new genus, Azospirillum gen. nov. and two species, Azospirillum lipoferum (Beijerinck) comb. nov. and Azospirillum brasilense sp. nov. Can J Microbiol. 1978;24:967-80. https://doi.org/10.1139/m78-160
https://doi.org/10.1139/m78-160...
). Since its description, several publications using these two species described as plant-growth-promoting bacteria turned this genus to be the most studied and used species in agriculture over the last decades, after rhizobia. Several mechanisms that explain this growth promotion were described and associated with the application of different strains and plants (Cassán and Diaz-Zorita, 2016Cass�n F, Diaz-Zorita M. Azospirillum sp. in current agriculture: From the laboratory to the field. Soil Biol Biochem. 2016;103:117-30. https://doi.org/10.1016/j.soilbio.2016.08.020
https://doi.org/10.1016/j.soilbio.2016.0...
). The principal morphological modification of plants inoculated with selected strains is associated with producing a pool of phytohormones, especially auxins; this observation was first reported in 1979 (Reynders and Vlassak, 1979Reynders L, Vlassak K. Conversion of tryptophan to indoleacetic acid by Azospirillum brasilense. Soil Biol Biochem. 1979;11:547-8.).

Azospirillum is not an exception, associative bacteria that produce auxins are normally present in the rhizosphere (Spaepen et al., 2007Spaepen S, Vers�es W, Gocke D, Pohl M, Steyaert J, Vanderleyden J. Characterization of phenylpyruvate decarboxylase, involved in auxin production of Azospirillum brasilense. J Bacteriol. 2007;189:7626-33. https://doi.org/10.1128/JB.00830-07
https://doi.org/10.1128/JB.00830-07...
), modifying the RA and stimulating water and nutrients acquisition (Cassán et al., 2014Cass�n F, Vanderleyden J, Spaepen S. Physiological and agronomical aspects of phytohormone production by model plant-bacteria-promoting rhizobacteria (PGPR) belonging to the genus Azospirillum. J Plant Growth Regul. 2014;33:440-59. https://doi.org/10.1007/s00344-013-9362-4
https://doi.org/10.1007/s00344-013-9362-...
). Herbaspirillum genus was described six years later in association with different cereals and sugarcane (Baldani et al., 1986Baldani JI, Baldani VLD, Seldin L, D�bereiner J. Characterization of Herbaspirillum seropedicae gen. nov., sp. nov., a root-associated nitrogen-fixing bacterium. Int J Syst Bacteriol. 1986;36:86-93. https://doi.org/10.1099/00207713-36-1-86
https://doi.org/10.1099/00207713-36-1-86...
). Herbaspirillum spp. differ from the Azospirillum genus in several aspects: as a β proteobacterium, it is considered an aggressive colonizer of the root interior, establishing itself not only in the cortex and vascular tissues of roots but also systemically in the whole plant, being considered a plant endophyte by the inoculation experiments (Monteiro et al., 2012Monteiro RA, Balsanelli E, Wassem R, Marin AM, Brusamarello-Santos LCC, Schmidt MA, Tadra-Sfeir MZ, Pankievicz VCS, Cruz LM, Chubatsu LS, Pedrosa FO, Souza EM. Herbaspirillum-plant interaction: microscopical, histological and molecular aspects. Plant Soil. 2012;356:175-96. https://doi.org/10.1007/s11104-012-1125-7
https://doi.org/10.1007/s11104-012-1125-...
). Although colonization patterns can differ between these two genera/species and strains tested, both bacteria produce auxins and can modulate root development (Bastián et al., 1998Basti�n F, Cohen A, Piccoli P, Luna V, Bottini R, Baraldi R, Bottini R. Production of indole-3-acetic acid and gibberellins A1 and A3 by Acetobacter diazotrophicus and Herbaspirillum seropedicae in chemically-defined culture media. Plant Growth Regul. 1998;24:7-11. https://doi.org/10.1023/A:1005964031159
https://doi.org/10.1023/A:1005964031159...
).

Using scanner methodologies, it is possible to quantify these parameters during growth and evaluate the adaptations upon biotic and abiotic conditions applied to the corn plants. The WinRHIZO software is one of the available methods described by Bauhus and Messier (1999)Bauhus J, Messier C. Evaluation of fine root length and diameter measurements obtained using RHIZO image analysis. Agron J. 1999;91:142-7. https://doi.org/10.2134/agronj1999.00021962009100010022x
https://doi.org/10.2134/agronj1999.00021...
. Using this software, modification of RA can easily quantify the inoculation response using selected strains. Although root promotion is well described for Azospirillum (Cassán et al., 2014Cass�n F, Vanderleyden J, Spaepen S. Physiological and agronomical aspects of phytohormone production by model plant-bacteria-promoting rhizobacteria (PGPR) belonging to the genus Azospirillum. J Plant Growth Regul. 2014;33:440-59. https://doi.org/10.1007/s00344-013-9362-4
https://doi.org/10.1007/s00344-013-9362-...
), it is less studied for other genera, such as Herbaspirillum, especially the RA modifications upon stressed conditions (Dias et al., 2021Dias AC, Alves GC, Silva TF, Santos LA, Reis VM. Comparison of N uptake of maize inoculated with two diazotrophic bacterial species grown under two N levels. Arch Agron Soil Sci. 2021;68:1621-97. https://doi.org/10.1080/03650340.2021.1922672
https://doi.org/10.1080/03650340.2021.19...
).

Nitrogen plays an essential role in root development (Liu and Von Wirén, 2017Liu Y, Von Wir�n N. Ammonium as a signal for physiological and morphological responses in plants. J Exp Bot. 2017;68:2581-92. https://doi.org/10.1093/jxb/erx086
https://doi.org/10.1093/jxb/erx086...
). The association of rhizosphere activity (RA) data during initial corn growth in controlled conditions can tremendously aid in plant growth promotion and serve as a robust tool for comparing new bacterial inoculants for cereals. In this study, we aimed to compare two diazotrophic bacterial genera, the A. baldaniorum species referred to as strain Ab-Sp245, a model strain formerly known as A. brasilense (Ferreira et al., 2020Ferreira NS, Sant� Anna FH, Reis VM, Ambrosini A, Volpiano CG, Rothballer M, Schwab S, Baura VA, Balsanelli E, Pedrosa FO, Passaglia LMP, Souza EM, Hartmann A, C�ssan F, Zilli JE. Genome-based reclassification of Azospirillum brasilense Sp245 as the type strain of Azospirillum baldaniorum sp. nov. Int J Syst Evol Microbiol. 2020;70:6203-12. https://doi.org/10.1099/ijsem.0.004517
https://doi.org/10.1099/ijsem.0.004517...
), and H. seropedicae species strain Hs-ZAE94, specifically selected for corn inoculation (Alves et al., 2021Alves GC, Santos CLR, Zilli JE, Reis Jr FB, Marriel IE, Breda FA, Boddey RM, Reis VM. Agronomic evaluation of Herbaspirillum seropedicae strain ZAE94 as an inoculant to improve maize yield in Brazil. Pedosphere. 2021;31:583-95. https://doi.org/10.1016/S1002-0160(21)60004-8
https://doi.org/10.1016/S1002-0160(21)60...
). We aimed to observe, over a period of 22 days after planting (DAP), how these two genera interacted with two distinct nitrogen levels, namely, 0.6- and 6.0 mmol L-1 of N. To determine the influence of cultivar or bacterial size on growth promotion, a bioassay was set up to compare the root architecture (RA) of two corn cultivars in response to the addition of exogenous auxin, i.e., indole-3-acetic acid (IAA), and their reaction to two bacterial concentrations (10-6 and 10-8 cells mL-1) as well.

MATERIALS AND METHODS

Greenhouse experiment

The experiment was developed in a 2 × 3 factorial, with four repetitions, the first factor was composed of two nitrogen doses, 0.6 mmol L-1 (LN) and 6.0 mmol L-1 (HN) by the modified Hoagland and Arnold (1950)Hoagland DR, Arnold DI. The water-culture method for growing plants without soil. 2nd ed. California: Agricultural Experiment Station; 1950. (Circular number 347). solution applied twice during the growth period. The second factor was the inoculation being: non-inoculated (NI = Control), inoculated A. baldaniorum (strain Sp245 = Ab-Sp245) and with H. seropedicae (strain ZAE94 = Hs-ZAE94). The experiment was conducted in an automatic greenhouse with humidity and temperature control for 22 days after planting (DAP) (Figure 1).

Figure 1
Timescale of the pot experiment. DAP: days after planting.

Inoculation and bacterial counting

The bacteria used were A. baldaniorum strain Sp245 (= BR11005, isolated from wheat roots planted in Rio Grande do Sul State, Brazil) and H. seropedicae, strain ZAE94 (= BR11417, isolated from surface-sterilized rice roots, Seropédica-RJ, Brazil). Both strains were acquired from the Centre of Biological Resources Johanna Döbereiner - CRB-JD (BR). Strain Ab-Sp245 can be considered a model bacterium for the studies involving auxin response and was the first diazotrophic bacterium with the genome sequenced by Zhulin and Wisniewsky-Dye (Wisniewski-Dyé et al., 2011Wisniewski-Dy� F, Borziak K, Khalsa-Moyers G, Alexandre G, Sukharnikov LO, Wuichet K, Hurst GB, McDonald WH, Robertson JS, Barbe V, Calteau A, Rouy Z, Mangenot S, Prigent-Combaret C, Normand P, Boyer M, Siguier P, Dessaux Y, Elmerich C, Condemine G, Krishnen G, Kennedy I, Paterson AH, Gonz�lez V, Mavingui P, Zhulin IB. Azospirillum genomes reveal transition of bacteria from aquatic to terrestrial environments. PLoS Genet. 2011;7:e1002430. https://doi.org/10.1371/journal.pgen.1002430
https://doi.org/10.1371/journal.pgen.100...
). The strain Hs-ZAE94 was selected for corn based on the previous studies by Alves et al. (2015Alves GC, Videira SS, Urquiaga S, Reis VM. Differential plant growth promotion and nitrogen fixation in two genotypes of maize by several Herbaspirillum inoculants. Plant Soil. 2015;387:307-21. https://doi.org/10.1007/s11104-014-2295-2
https://doi.org/10.1007/s11104-014-2295-...
, 2020).

The procedure used in this evaluation is all described by Baldani et al. (2014)Baldani JI, Reis VM, Videira SS, Boddey LH, Baldani VLD. The art of isolating nitrogen-fixing bacteria from non-leguminous plants using N-free semi-solid media: A practical guide for microbiologists. Plant Soil. 2014;384:413-31. https://doi.org/10.1007/s11104-014-2186-6
https://doi.org/10.1007/s11104-014-2186-...
. Initially, a single colony was obtained from the minimal medium NFb 3x the amount of bromothymol blue and inoculated in 5 mL of modified DYGS medium with malic acid pH 6.5. Bacteria were maintained at 30 °C in a rotary shaker at 175 rpm for 20 h. After that, 200 µL of cell suspension was inoculated in 150 mL of the NFB medium without an indicator. After cell growth, bacteria were counted using a Neubauer counting plate to equalize both populations to 108 cells mL-1 using saline solution to dilute the cells if necessary. The inoculant solutions were applied directly on the seeds at the time of planting at a dosage of 1 mL per seed, in the control treatment, phosphate buffer (pH 7.0).

At nine, 16, and 22 DAP, 1 g of roots was sampled for bacterial counting using the N-free semi-solid media NFb and JNFb for the strains Ab-Sp245 and Hs-ZAE94, respectively. Bacterial counting was performed using the most probable number technique (MPN) with the application of McCrady’s Table using three replicates, as described by Baldani et al. (2014)Baldani JI, Reis VM, Videira SS, Boddey LH, Baldani VLD. The art of isolating nitrogen-fixing bacteria from non-leguminous plants using N-free semi-solid media: A practical guide for microbiologists. Plant Soil. 2014;384:413-31. https://doi.org/10.1007/s11104-014-2186-6
https://doi.org/10.1007/s11104-014-2186-...
.

Pot experiment procedures and analysis

Seeds were superficially disinfested using NaOCl (0.5 %) plus Tween 20 (0.01 %) during 5 min agitating using a rotatory shaker at 165 rpm and washed three times using phosphate buffer 50 mmol L-1 pH 7.0 for 5 min each time at the same condition. Pots with 1, 2, and 3 kg capacity were used containing a sterile substrate, sand + vermiculite (2:1 v/v) autoclaved at 121 °C for 20 min and repeated this operation two days later. Three seeds were sown per pot, inoculated, and after five days of seedling emergence, thinning was performed for homogenization, keeping one plant per pot.

The substrate chemical analysis had the following characteristics: pH(H2O) 6.70; macro elements (in cmolc dm-3): Ca2+ = 0.39; Mg2+ = 2.81; Al3+ = 0.0; (mg dm-3) K = 48.72 and P = 5.97; N = 0.01 %. Fertilization was carried out in a fractional way in applications of a maximum of 10 mL each per pot of modified Hoagland solution with a pH of 5.8 (Hoagland and Arnold, 1950Hoagland DR, Arnold DI. The water-culture method for growing plants without soil. 2nd ed. California: Agricultural Experiment Station; 1950. (Circular number 347).) using two N concentrations using ½ of the ionic force (Table 1).

Table 1
Nutritive solution used in the growth of corn plant (Hoagland and Arnold, 1950Hoagland DR, Arnold DI. The water-culture method for growing plants without soil. 2nd ed. California: Agricultural Experiment Station; 1950. (Circular number 347).)

Root architecture

Sampled roots immersed in 50 % ethanol were scanned and characterized by image analyses using WinRHIZO Pro® software (Regent Instruments, QC, Quebec, Canada) coupled to an Epson Expression 11000XL LA2400 image scanner, as described by Bauhus and Messier (1999)Bauhus J, Messier C. Evaluation of fine root length and diameter measurements obtained using RHIZO image analysis. Agron J. 1999;91:142-7. https://doi.org/10.2134/agronj1999.00021962009100010022x
https://doi.org/10.2134/agronj1999.00021...
. Roots were laid out in an acrylic container (0.30 × 0.40 m), with water at an approximate depth of 1 cm, and placed onto the scanner. Root length (RL - cm), projected (PA) and surface area (RS - cm2), root volume (RV - cm3), and the number of tips, forks, and crossings were recorded. Root length was classified as follows: very thin root length (L≤0.5 mm). After analysis, the roots were dried at 60 °C to obtain a constant root dry weight (RDW).

Bioassays

A bioassay was developed to evaluate the application of exotic IAA using four concentrations (10, 1, 0.1, 0.01, 0.001 nmol L-1) with two corn hybrids, cultivar (cv) SHS5050 and Dekalb 7815. The second bioassay was made with two bacterial population densities, 106 and 108 cells mL-1, of the strains Ab-Sp245 and Hs-ZAE94 using only SHS5050. Both strains were grown and multiplied previously. All bioassays were done with superficially disinfected seeds as described for the pot experiment.

The bioassays were pre-germinated on a sterile double layer using Germitest paper (28 × 38 cm) moistened with 40 mL of autoclaved distilled water for two days in BOD at 30 °C in the dark involved in plastic film. Afterward, the seedlings were selected according to the radicle length (± 1.5 cm) and were immersed for 1 h in the respective IAA concentrations or bacterial suspensions. Then, once again, they were placed to germinate under the same conditions described previously for 6 days, with the photoperiod cycle adjusted to 12 h of light. The trial was conducted in a completely randomized design with 12 replications. In the end, plant roots were scanned for morphology assessment using the software WinRHIZO Pro™. In the bioassay, the images recorded and evaluated with differences observed by the statistic evaluation were the number of tips, forks, and crossings, and the length classified as very thin (0.0 < L < 0.5 mm). The other parameters did not differ during this initial growth period.

Statistical analysis

Pot experiment was analyzed in a factorial design and the bioassays were evaluated by genotype and strain concentration individually. The statistical analysis was performed using the statistical programs SAEG 9.0 and SISVAR 5.1. Analysis of variance was performed for the assumptions of normality (Lilliefors test) and homogeneity of error variances (Cochran’s test 1941), the means of the variables were submitted to analysis of variance, using the Scott- Knott test with p<0.05 for comparison between means. A regression analysis was performed for the bioassays using increased concentrations of the IAA.

RESULTS

Pot experiment

Bacterial counting evaluated during the experiment showed that both strains were established on corn roots with population size higher than 106 cell g fresh mass after 9, 16, and 22 DAP and differing from the uninoculated control (Figure 2). Nitrogen levels also modulate the bacterial numbers being higher in roots inoculated with Hs-ZAE94 after 16 days at a high N level (HN-6.0 mmol L-1 N). Ab-Sp245 maintained a lower population compared to Hs-ZAE94 22 DAP at HN, reducing it at LN (0.6 mmol L-1).

Figure 2
Bacterial counting using the Most Probable Number technique present in the root of corn inoculated with Ab-Sp 245 and Hs- ZAE 94 (n = 3) Lowercase letters differ by Scott-Knott at p<0.05.

After 22 days of growth, plants accumulate the mean value of 734 mg of shoot dry mass (SDM), although inoculation using Hs-ZAE94 improved the SDM by 17 % over the control, at LN, this value was not significant (Figure 3).

Figure 3
Corn dry mass accumulation of shoot (a) and root (b) grown under two N levels (0.6 and 6.0 mmol L-1) for 22 days inoculated or not with Ab-Sp245 and Hs-ZAE94. Letters differ at p<0.05 by the Scott-Knott test (n = 4). Bars represent the standard error.

Applying ten times more N (6.0 mmol L-1 - HN), plants accumulated 1396 mg as a mean value, almost two times more SDM after this period (Figure 3a). Again, at HN an improvement was observed upon the inoculated plants with HS-ZAE94, resulting in 18 % more SDM than the control. Ab-Sp245 showed a reduced growth promotion compared to Hs-ZAE94. This data shows that growth promotion between the two strains occurred in HS-ZAE94 more efficiently in the N use than Ab-Sp245 during this initial growth phase (Figure 3), related to the high bacterial numbers of Hs-ZAE94, compared to Ab-Sp245 (Figure 2). Differences in SDM delay 22 days to appear when plants start to use the N sources of the substrate (Figure 3).

Root dry mass (RDM) of the corn plants was not modified by the high N level (6.0 mmol L-1) observed after 22 DAP (Figure 3b). In this case, Ab-Sp245 reduced the RDM accumulation and HS-ZAE94 produced a similar mass compared to the uninoculated control (Figure 3b). It seems that corn inoculated with Hs-ZAE94 used the nutrients to improve SDM with a similar root mass. However, the architecture of the root can explain the differences observed and not sensed just using biomass data.

Root analysis revealed that inoculation altered the length of fine roots in both two strains tested (Figure 4). However, the extent of these modifications was found to be affected by the N level. Especially for Ab-Sp245, modifications were observed at a low N level (0.6 mmol L-1), while for both strains, the fine roots were improved at the highest N level of 6.0 mmol L-1.

Figure 4
Estimation of the length of fine roots (root class <1.5 mm) of corn inoculated or not with Ab-Sp245 and Hs-ZAE94. Letters differ at p<0.05 by the Scott-Knott test (n = 4). Bars represent the standard error.

Bioassays

Two bioassays were performed using two corn cultivars grown in the presence of external IAA solution diluted from 0.1 to 0.001 nmol L-1. As expected, each cv. exhibited a similar response but in a different magnitude (Figure 5). A concentration of 1 nmol L-1 improved the number of tips (Figures 4a and 4b), forks (Figures 5c and 5d), and crossings (Figures 5d and 5e) in both cultivars tested, but in the Dekalb 7815, the dose-response is narrower than the one observed for SHS5050 (Figure 5). Also, the total length of fine roots (L ≤0.5 mm) showed the same pattern, differing the growth response in the root class most important for nutrient and water acquisition (Figure 6). Cv. SHS5050, used in this study, presented a root growth response for the external IAA addition two times higher than observed for cv. Dekalb 7815 (Figure 6). In addition, cv. SHS5050 exhibited a wider range of positive responses than the cv. Dekalb, maintaining a higher response between 1 to 0.1 nmol L-1 IAA concentration for the number of tips, forks, and crossings (Figures 5a, 5c ad 5e) and improving the length of fine roots compared to cv. Dekalb (Figure 6).

Figure 5
Root traits of two hybrid maize cultivars SHS 5050 and Dekalb 7815 grew in the presence of increased concentrations of IAA (10, 1, 0.1, 0.01, and 0.01 nmol L-1) during six days (n = 12). Bars represent the standard error.
Figure 6
Evaluation of length of the class of fine roots (0< L ≤ 0.5 cm) of two corn cultivars SHS 5050 (a) and Dekalb 7815 (b) grown in the presence of increased concentrations of IAA (10, 1, 0.1, 0.01, and 0.01 nmol L-1) during six days (n = 12).

The second comparison was done with bacterial population size (Figure 7). The two bacterial strains improved the root parameters evaluated after six days of growth in a different magnitude (Figure 8). Strain Ab-Sp245 improved root traits with a lower percentage of increment compared to Hs-ZAE94, in both cell numbers (106, and 108 cells mL-1), and Ab-Sp245 reduced the increments response in the presence of higher cell numbers (Figure 7a). The opposite occurred in the plants inoculated with Hs-ZAE94, where increments were higher and observed in all traits evaluated, especially at the population of 108 cells mL-1 (Figure 7b), the same population size used in the pot assay. These differences can explain, in part, the growth response observed by the corn plants after 22 DAP (Figure 3), where population counts of both strains differ along harvest time (Figure 2).

Figure 7
Measurement of corn root morphology increments using two population sizes (106 and 108 cells mL-1) of Ab-Sp245 (a) and Hs-ZAE94 (b) measured six days after inoculation (n = 12). * Differ at p≤0.05 comparing inoculated plants over the control.
Figure 8
Corn bioassay cultivar SHS5050 inoculated with two bacterial concentrations and evaluated six days after inoculation. Root morphology was measured using the software WinRHIZO Pro™.

DISCUSSION

Although both strains produce IAA in a culture medium, they differ in quantities produced, consequently leading to modifications of the root phenotype (Figures 5 and 6). Additionally, plant colonization (Figure 2) can affect growth performance (Figure 3). A previous study described that A. baldaniorum Ab-Sp245 produces 5 to 6 µg mL-1 IAA in a medium supplied with tryptophan (Ona et al., 2005Ona O, Impe JV, Prinsen E, Vanderleyden J. Growth and indole-3-acetic acid biosynthesis of Azospirillum brasilense Sp245 is environmentally controlled. FEMS Microbiol Letters. 2005;246:125-32. https://doi.org/10.1016/j.femsle.2005.03.048
https://doi.org/10.1016/j.femsle.2005.03...
). Under different stressed conditions, such as saline or oxidative stress, this strain produces varying amounts of IAA ranging from 0.4 to 6.2 µg mL-1 in a culture medium (Molina et al., 2018Molina R, Rivera D, Mora V, L�pez G, Rosas S, Spaepen S, Vanderleyden J, Cass�n F. Regulation of IAA biosynthesis in Azospirillum brasilense under environmental stress conditions. Curr Microbiol. 2018;75:1408-18. https://doi.org/10.1007/s00284-018-1537-6
https://doi.org/10.1007/s00284-018-1537-...
). On the other hand, H. seropedicae produces 7 ng mL-1 in a culture medium, especially in the free hormone fraction, as determined by GC-SIM analysis (Bastián et al., 1998Basti�n F, Cohen A, Piccoli P, Luna V, Bottini R, Baraldi R, Bottini R. Production of indole-3-acetic acid and gibberellins A1 and A3 by Acetobacter diazotrophicus and Herbaspirillum seropedicae in chemically-defined culture media. Plant Growth Regul. 1998;24:7-11. https://doi.org/10.1023/A:1005964031159
https://doi.org/10.1023/A:1005964031159...
). This level is 100 less compared to A. baldaniorum, as measured using colorimetric methods. It was found that the bacterium tested Hs-ZAE94 can reach a concentration of 11.97 mg L-1 when growing optimized for higher IAA (Scheidt et al., 2020Scheidt W, Pedroza ICPS, Fontana J, Meleiro LAM, Soares LHB, Reis VM. Optimization of culture medium and growth conditions of the plant growth-promoting bacterium Herbaspirillum seropedicae BR11417 for its use as an agricultural inoculant using response surface methodology (RSM). Plant Soil. 2019;451:75-87. https://doi.org/10.1007/s11104-019-04172-0
https://doi.org/10.1007/s11104-019-04172...
). This indicates that depending on the growth conditions and medium tested, both bacteria can act as growth promoters and modify root architecture, as shown in figures 7 and 8.

Genus Azospirillum has been the focus of research since 1999 regarding its ability to promote growth primarily through the production of indole-3-acetic acid (IAA) (Dobbelaere et al., 1999Dobbelaere S, Croonenborghs A, Thys A, Vande Broek A, Vanderleyden J. Phytostimulatory effect of Azospirillum brasilense wild type and mutant strains altered in IAA production on wheat. Plant Soil. 1999;212:155-64. https://doi.org/10.1023/A:1004658000815
https://doi.org/10.1023/A:1004658000815...
). The IAA is the most abundant naturally occurring auxin and is involved in plant development coordination (Abel and Theologis, 2010Abel S, Theologis A. Odyssey of auxin. Cold Spring Harb Perspect Biol. 2010;2:a004572. https://doi.org/10.1101/cshperspect.a004572
https://doi.org/10.1101/cshperspect.a004...
). The Sp245 strain, now known as the A. baldaniorum species, is the most extensively studied bacterium in terms of its auxin response to inoculated plants, particularly corn and other grasses (Steenhoudt and Vanderleyden, 2000Steenhoudt O, Vanderleyden J. Azospirillum, a free-living nitrogen-fixing bacterium closely associated with grasses: Genetic, biochemical and ecological aspects. FEMS Microbiol Rev. 2000;24:487-506. https://doi.org/10.1111/j.1574-6976.2000.tb00552.x
https://doi.org/10.1111/j.1574-6976.2000...
), with at least three pathways described (Puyvelde et al., 2011Puyvelde SV, Cloots L, Engelen K, Das F, Marchal K, Vanderleyden J, Spaepen S. Transcriptome analysis of the rhizosphere bacterium Azospirillum brasilense reveals an extensive auxin response. Microb Ecol. 2011;61:723-8. https://doi.org/10.1007/s00248-011-9819-6
https://doi.org/10.1007/s00248-011-9819-...
), of which two are tryptophan dependent. Fine-tuning IAA levels is critical to promoting root development and other key plant developmental processes (Di et al., 2016Di D-W, Zhang C, Luo P, An C-W, Guo G-Q. The biosynthesis of auxin: how many paths truly lead to IAA? Plant Growth Regul. 2016;78:275-85. https://doi.org/10.1007/s10725-015-0103-5
https://doi.org/10.1007/s10725-015-0103-...
). The IAA can be considered a communication signal to initiate plant interaction, and bacterial size can significantly impact growth promotion (Puyvelde et al., 2011Puyvelde SV, Cloots L, Engelen K, Das F, Marchal K, Vanderleyden J, Spaepen S. Transcriptome analysis of the rhizosphere bacterium Azospirillum brasilense reveals an extensive auxin response. Microb Ecol. 2011;61:723-8. https://doi.org/10.1007/s00248-011-9819-6
https://doi.org/10.1007/s00248-011-9819-...
), as observed in figures 2 and 3.

Another critical point to consider is the interaction between the inoculated bacterium and the natural population already present in the seed. This can be done through microbiome analysis for example, which allows us to understand how the natural population interacts with the inoculated strain. The research conducted by Carril et al. (2021)Carril P, Cruz J, di Serio C, Pieraccini G, Bessai SA, Tenreiro R, Cruz C. Modulation of the wheat seed-borne bacterial community by Herbaspirillum seropedicae RAM10 and its potential effects for tryptophan metabolism in the root endosphere. Front Microbiol. 2021;23:12. https://doi.org/10.3389/fmicb.2021.792921
https://doi.org/10.3389/fmicb.2021.79292...
demonstrated that when H. seropedicae was used as an inoculant for wheat plants, it could alter the metabolic landscape within the endosphere. This, in turn, influenced the functionality of the endophytic community. These findings are observed in this study. Furthermore, the interaction between the bacterial species and corn cultivar tested was found to be different, as observed in figures 5 and 6. This highlights the importance of coordinating the modulation of indole-3-acetic acid (IAA) turnover and degradation by the bacteria with the specific plant cultivar to optimize the potential benefits. It is well described that the ideal internal balance of one plant cultivar will interact with the added inoculant and the bacterial degradation of IAA. Not only is its production, but it is also often required for full plant growth promotion and root development (Leveau and Lindow, 2005Leveau JH, Lindow SE. Utilization of the plant hormone indole-3-acetic acid for growth by Pseudomonas putida strain 1290. Appl Environ Microbiol. 2005;71:2365-71. https://doi.org/10.1128/AEM.71.5.2365-2371.2005
https://doi.org/10.1128/AEM.71.5.2365-23...
).

Root architecture modifies during plant development, and root plasticity is the key to acclimating plants in unfavorable environments, including N stress. How corn coordinated the RA associated with N level and inoculation treatments is not easy to follow and remains unclear (Kong et al., 2014Kong X, Zhang M, De Smet I, Ding Z. Designer crops: optimal root system architecture for nutrient acquisition. Trends Biotechnol. 2014;32:597-8. https://doi.org/10.1016/j.tibtech.2014.09.008
https://doi.org/10.1016/j.tibtech.2014.0...
) and involves the plant genotype (Dechorgnat et al., 2018Dechorgnat J, Francis KL, Dhugga KS, Rafalski JA, Tyerman SD, Kaise BN. Root ideotype influences Nitrogen transport and assimilation in maize. Front Plant Sci. 2018;24:9:531. https://doi.org/10.3389/fpls.2018.00531
https://doi.org/10.3389/fpls.2018.00531...
). This study shows that bacteria used as an inoculant can also act in the presence of two N levels, high and low, and root biomass was not modified by the bacteria applied for 22 days and only at high N level, inoculation differs the root biomass (Figure 3b). However, RA shifted depending on the N level and bacteria tested (Figure 4), and this fine-tuning modified the shoot biomass accumulation (Figure 3a).

It is well known that RA is also dependent on the availability of macro and micronutrients, however, the two most important ones are N and P. The availability of these two elements modifies the growth response of SR and LR. Under high-N conditions, the LR is strongly inhibited, whereas, at low N, LR elongation is enhanced (Bellini et al., 2014Bellini C, Pacurar DI, Perrone I. Adventitious roots and lateral roots: Similarities and differences. Ann Rev Plant Biol. 2014;65:639-66. https://doi.org/10.1146/annurev-arplant-050213-035645
https://doi.org/10.1146/annurev-arplant-...
; Kiba and Krapp, 2016Kiba T, Krapp A. Plant nitrogen acquisition under low availability: Regulation of uptake and root architecture. Plant Cell Physiol. 2016;57:707-14. https://doi.org/10.1093/pcp/pcw052
https://doi.org/10.1093/pcp/pcw052...
; Liu and Von Wirén, 2017Liu Y, Von Wir�n N. Ammonium as a signal for physiological and morphological responses in plants. J Exp Bot. 2017;68:2581-92. https://doi.org/10.1093/jxb/erx086
https://doi.org/10.1093/jxb/erx086...
). Similarly, low LR branching density improves corn growth with low nitrogen (Zhan and Lynch, 2015Zhan A, Lynch JP. Reduced frequency of lateral root branching improves N capture from low-N soils in maize. J Exp Bot. 2015;66:2055-65. https://doi.org/10.1093/jxb/erv007
https://doi.org/10.1093/jxb/erv007...
) and water (Zhan et al., 2015Zhan A, Lynch JP. Reduced frequency of lateral root branching improves N capture from low-N soils in maize. J Exp Bot. 2015;66:2055-65. https://doi.org/10.1093/jxb/erv007
https://doi.org/10.1093/jxb/erv007...
), but high LR branching density improves phosphorus acquisition (Jia et al., 2018Jia X, Liu P, Lynch JP. Greater lateral root branching density in maize improves phosphorus acquisition from low phosphorus soil. J Exp Bot. 2018;69:4961-70. https://doi.org/10.1093/jxb/ery252
https://doi.org/10.1093/jxb/ery252...
). The role of root architecture in plant development and acclimation to unfavorable environments, including N stress, is well established.

This study demonstrates that inoculated bacteria can act under various N levels, alter root architecture, and modify shoot biomass accumulation. Nitrogen serves as a central element in amino acids and proteins, and the bacterial strain, plant cultivar, and N source influence its uptake and assimilation. The tripartite interaction of these factors needs to be more clearly understood to optimize yields and N use efficiency. Finally, it is important to recognize that environmental factors play a significant role in managing plant growth and development, and these must be considered in conjunction with the interaction of bacterial strains, plant cultivars, and N sources.

CONCLUSION

Architecture of corn roots is altered by bacterial species/strains, with the extent of growth response being determined by the corn genotype. In particular, the association of H. seropedicae ZAE94, in combination with high levels of nitrogen, results in increased accumulation of both root and shoot biomass in maize plants after 22 days of growth. Population density of bacterial strain used as a seed inoculation also plays a role in the magnitude of root response, with Hs-ZAE94 eliciting a higher response compared to A. baldaniorum Sp245 at a density of 108 cells mL-1. These modifications could also be observed using a six-day-old plant bioassay, but biomass analysis in a pot experiment is required for accurate measurement, which takes 22 days. Utilizing different strains for inoculation has the potential to alter the nitrogen use efficiency of corn plants, offering a promising approach to enhance plant growth and mitigate environmental N losses.

ACKNOWLEDGMENTS

The authors express their gratitude to the Coordination of Improvement of Higher Education Personnel – CAPES (Grant No. 001) of TRS. To the National Council of Scientific and Technological Development - CNPq [grant number INCT 456133/2014-2] and fellowshipsof ACD and VMR. To FAPERJ – fellowship of GCA and CNE of VMR.

  • How to cite: Dias AC, Alves GC, Silva TFR, Reis VM. Inoculation effects of growthpromoting bacteria on corn root architecture: influence of nitrogen levels, bacterial populations, and plant genotypes. Rev Bras Cienc Solo. 2023;47:e0230059 https://doi.org/10.36783/18069657rbcs20230059

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Edited by

Editors: José Miguel Reichert https://orcid.org/0000-0001-9943-2898 and João Tavares Filho https://orcid.org/0000-0002-6005-6335.

Publication Dates

  • Publication in this collection
    22 Dec 2023
  • Date of issue
    2023

History

  • Received
    26 May 2023
  • Accepted
    24 Aug 2023
Sociedade Brasileira de Ciência do Solo Sociedade Brasileira de Ciência do Solo, Departamento de Solos - Edifício Silvio Brandão, s/n, Caixa Postal 231 - Campus da UFV, CEP 36570-900 - Viçosa-MG, Tel.: (31) 3612-4542 - Viçosa - MG - Brazil
E-mail: sbcs@sbcs.org.br