Abstract
BACKGROUND
Haemophilus influenzae (Hi) serotype b (Hib) conjugate vaccine was incorporated into the infant immunisation schedule in Brazil in 1999, where Hib was one of the major etiologic sources of community-acquired bacterial meningitis.
OBJECTIVES
The purpose of this study is to describe the molecular epidemiology of invasive Hi disease in Rio de Janeiro state, Brazil, before and after vaccine introduction.
METHODS
Surveillance data from 1986 to 2014 were analysed. Hi isolates recovered from cerebrospinal fluid (CSF) or blood from 1993 to 2014 were serotyped by slide agglutination, genotyped by multilocus sequence typing (MLST), and the capsule type evaluation, differentiation of serologically non-typeable isolates, and characterisation of the capsule (cap) locus was done by polymerase chain reaction. Antimicrobial susceptibility testing was performed using E-test.
FINDINGS
From 1986 to 1999 and from 2000 to 2014, 2580 and 197 (42% without serotype information) confirmed cases were reported, respectively. The case fatality rate was 17% and did not correlate with the strain. Hib and b- variant isolates belonged to ST-6, whereas serotype a isolates belonged to the ST-23 clonal complex. Serotype a appeared to emerge during the 2000s. Non-encapsulated isolates were non-clonal and distinct from the encapsulated isolates. Ampicillin-resistant isolates were either of serotype b or were non-encapsulated, and all of them were β-lactamase-positive but amoxicillin-clavulanic acid susceptible.
MAIN CONCLUSIONS
Although Hi meningitis became a relatively rare disease in Rio de Janeiro after the introduction of the Hib conjugate vaccine, the isolates recovered from patients have become more diverse. These results indicate the need to implement an enhanced surveillance system to continue monitoring the impact of the Hib conjugate vaccine.
Haemophilus influenzae; meningitis; MLST; vaccine; serotypes
Haemophilus influenzae (Hi) serotype b (Hib) infection is endemic globally and produces a large spectrum of clinical manifestations. Meningitis is the most common; however, the disease spectrum includes pneumonia, epiglottitis, septicaemia, cellulitis, and septic arthritis (Peltola 2000Peltola H. Worldwide Haemophilus influenzae type b disease at the beginning of the 21st century: global analysis of the disease burden 25 years after the use of the polysaccharide vaccine and a decade after the advent of conjugates. Clin Microbiol Rev. 2000; 13(2): 302-17.). Children between three months and three years of age have the highest disease incidence, with 95% of meningitis cases occurring in children aged less than five years (Peltola 2000Peltola H. Worldwide Haemophilus influenzae type b disease at the beginning of the 21st century: global analysis of the disease burden 25 years after the use of the polysaccharide vaccine and a decade after the advent of conjugates. Clin Microbiol Rev. 2000; 13(2): 302-17., Kelly et al. 2004Kelly DF, Moxon ER, Pollard AJ. Haemophilus influenzae type b conjugate vaccines. Immunology. 2004; 113(2): 163-74.). Records on Hi meningitis maintained in Rio de Janeiro state, Brazil, date back to 1986. The introduction of the Hib conjugate vaccine (PRP-T) for routine use in infants as a part of the national immunisation program in Rio de Janeiro occurred in July 1999. Since then, high vaccine coverage in children aged less than one year has been achieved and a sharp reduction in reported cases has been observed (Ribeiro et al. 2007Ribeiro GS, Lima JB, Reis JN, Gouveia EL, Cordeiro SM, Lobo TS, et al. Haemophilus influenzae meningitis 5 years after introduction of the Haemophilus influenzae type b conjugate vaccine in Brazil. Vaccine. 2007; 25(22): 4420-8., Zanella et al. 2011Zanella RC, Bokermann S, Andrade ALSS, Flannery B, Brandileone MCC. Changes in serotype distribution of Haemophilus influenzae meningitis isolates identified through laboratory-based surveillance following routine childhood vaccination against H. influenzae type b in Brazil. Vaccine. 2011; 29(48): 8937-42.). In Rio de Janeiro, the average vaccination coverage is 96%, and the combined vaccine DTP-Hib, which replaced PRP-T vaccine in 2002, is used.
The Hi capsular polysaccharide is a cell-surface structure comprised of long carbohydrate chains that play an important role in determining bacterial virulence and are used to evade host immune defences (Kelly et al. 2004Kelly DF, Moxon ER, Pollard AJ. Haemophilus influenzae type b conjugate vaccines. Immunology. 2004; 113(2): 163-74.). In an animal model, Hi expressing capsular polysaccharide b has been shown to be the most virulent, followed by serotype a (Zwahlen et al. 1989Zwahlen A, Kroll JS, Rubin LG, Moxon ER. The molecular basis of pathogenicity in Haemophilus influenzae: comparative virulence of genetically-related capsular transformants and correlation with changes at the capsulation locus cap. Microb Pathog. 1989; 7(3): 225-35.). The capsule locus (cap) of all six Hi capsular types has a common organisation consisting of three functional regions (Leaves et al. 1995Leaves NI, Falla TJ, Crook DWM. The elucidation of novel capsular genotypes of Haemophilus influenzae type b with the polymerase chain reaction. J Med Microbiol. 1995; 43(2): 120-4.). Region I (ATP-driven export) contains four genes, i.e., bexA-D, involved in export of the polysaccharide to the cell surface (Kroll et al. 1990Kroll JS, Loynds B, Brophy LN, Moxon ER. The bex locus in encapsulated Haemophilus influenzae: a chromosomal region involved in capsule polysaccharide export. Mol Microbiol. 1990; 4(11): 1853-62.). Region III (post-polymerisation) contains the genes, hcsA and hcsB, associated with post-translational modifications and expression of the capsule (Sukupolvi-Petty et al. 2006Sukupolvi-Petty S, Grass S, St. Geme III JW. The Haemophilus influenzae type b hcsA and hcsB gene products facilitate transport of capsular polysaccharide across the outer membrane and are essential for virulence. J Bacteriol. 2006; 188(11): 3870-7.). Region II (serotype-specific), located between these two functional regions, encodes the genes (a-fcs1-4) associated with biosynthesis of serotype-specific carbohydrates and are unique to each of the six capsular types (van Eldere et al. 1995van Eldere J, Brophy L, Loynds B, Celis P, Hancock I, Carman S, et al. Region II of the Haemophilus influenzae type b capsulation locus is involved in serotype-specific polysaccharide synthesis. Mol Microbiol. 1995; 15(1): 107-18., Satola et al. 2003Satola SW, Schirmer PL, Farley MM. Complete sequence of the cap locus of Haemophilus influenzae serotype b and nonencapsulated b capsule-negative variants. Infect Immun. 2003; 71(6): 3639-44.).
In a typical Hib strain, regions I and III are flanked by the insertion element IS1016, which exists in duplicate with the presence of an IS1016-bexA partial deletion in one of the duplicate copies (Satola et al. 2003Satola SW, Schirmer PL, Farley MM. Complete sequence of the cap locus of Haemophilus influenzae serotype b and nonencapsulated b capsule-negative variants. Infect Immun. 2003; 71(6): 3639-44.). This deletion stabilises duplication, prevents loss of encapsulation, and results in increased capsular polysaccharide production, which together are likely to contribute towards virulence (Gilsdorf et al. 2004Gilsdorf JR, Marrs CF, Foxman B. Haemophilus influenzae: genetic variability and natural selection to identify virulence factors. Infect Immun. 2004; 72(5): 2457-61.). This mutation may also be associated with virulence in serotypes other than serotype b, since this cap locus organisation has also been found in other serotypes (Ogilvie et al. 2001Ogilvie C, Omikunle A, Wang Y, St. Geme III JW, Rodriguez CA, Adderson EE. Capsulation loci of non-serotype b encapsulated Haemophilus influenzae. J Infect Dis. 2001; 184(2): 144-9.).
The typical duplicated cap locus in Hib can undergo a recombination event resulting in loss of the intact bexA copy; the remaining truncated copy containing the bexA deletion results in the loss of capsule expression despite the presence of an intact region II (Leaves et al. 1995Leaves NI, Falla TJ, Crook DWM. The elucidation of novel capsular genotypes of Haemophilus influenzae type b with the polymerase chain reaction. J Med Microbiol. 1995; 43(2): 120-4.). This recombination event results in capsule-deficient mutants of Hib (b-) that retain all other attributes of the encapsulated form (Satola et al. 2003Satola SW, Schirmer PL, Farley MM. Complete sequence of the cap locus of Haemophilus influenzae serotype b and nonencapsulated b capsule-negative variants. Infect Immun. 2003; 71(6): 3639-44.). These b- variants can be differentiated by polymerase chain reaction (PCR)-based methods (Falla et al. 1994Falla TJ, Crook DWM, Brophy LN, Maskell D, Kroll JS, Moxon ER. PCR for capsular typing of Haemophilus influenzae. J Clin Microbiol. 1994; 32(10): 2382-6., Leaves et al. 1995Leaves NI, Falla TJ, Crook DWM. The elucidation of novel capsular genotypes of Haemophilus influenzae type b with the polymerase chain reaction. J Med Microbiol. 1995; 43(2): 120-4., Satola et al. 2003Satola SW, Schirmer PL, Farley MM. Complete sequence of the cap locus of Haemophilus influenzae serotype b and nonencapsulated b capsule-negative variants. Infect Immun. 2003; 71(6): 3639-44.).
We present here invasive Hi disease surveillance data, and results focused on the serotype b conjugate vaccine era of prevalence of different serotypes and genetic diversity of invasive isolates in Rio de Janeiro state.
MATERIALS AND METHODS
Surveillance data - Public health surveillance of Hi disease in Rio de Janeiro state was conducted by the Meningitis Advisory Committee of the State Department of Health. Only reporting of Hi meningitis is mandatory and is based on isolation of Hi from a normally sterile site or detection by culture-independent diagnostic tests (antigen detection or PCR). There was no significant change in the surveillance system in the vaccine era. The results obtained with PCR to detect H. influenzae are restricted to the period of validation of a PCR assay between 2004 and 2006; PCR has not been introduced into routine practice (Tuyama et al. 2008Tuyama M, Boente RF, Rebelo MC, Igreja RP, Barroso DE. The utility of the polymerase chain reaction assay for aetiologic definition of unspecified bacterial meningitis cases. Mem Inst Oswaldo Cruz. 2008; 103(2): 138-42.). From 1986 to 2014, surveillance data were provided by the State Department of Health. Between 1986 and 1992, only the total number of new cases was reported; no information on serotype was available. Moreover, the vaccination status of patients is unknown. The population of Rio de Janeiro was 14,391,282 in 2000 and 15,989,929 in 2010. Clinical and epidemiological data were analysed using EpiInfoTM (version 3.5.4, Centers for Disease Control and Prevention, Atlanta, GA, USA). The heterogeneity of proportions between groups was compared using the chi-squared test with Yates’s correction for statistical significance.
Collection, serotype identification, and antimicrobial susceptibility testing of clinical isolates - Heated blood agar was used to culture bacteria from the cerebrospinal fluid (CSF) or blood culture of patients with clinically diagnosed meningitis or other clinical manifestations. From 2000 to 2014, 65 stored Hi isolates recovered from invasive disease (meningitis = 46, septicaemia = 14, pneumonia = 5) were included. In addition, 72 (12%) isolates randomly selected from a list of 580 stored Hi samples, all characterised as serotype b and recovered from patients with meningitis between 1993 and 1999, were studied. Bacterial growth on Haemophilus test medium (HTM) agar plates (Oxoid, Basingstoke, Hampshire, UK) containing HTM supplement with the appearance of Gram-negative coccobacillus were identified using api NH (bioMérieux, Marcy-l’Étoile, France), which include a test for β-lactamase production. The serotype was determined by slide agglutination with specific rabbit antisera (BD Difco, Sparks, MD, USA), according to the manufacturer’s instructions.
Minimal inhibitory concentrations (MICs) of ampicillin, amoxicillin-clavulanic acid, ceftriaxone, rifampicin, chloramphenicol, cotrimoxazole, and azithromycin were determined using the E-test (bioMérieux, Marcy-l’Étoile, France), according to the manufacturer’s instructions. Briefly, a single E-test strip was placed onto HTM agar plates, which were incubated at 35ºC in a 5% CO2/95% air atmosphere for 20-24 hours. MIC interpretative standards for Hi were based on the Clinical and Laboratory Standards Institute document M100-S20 (CLSI 2010CLSI - Clinical Laboratory Standard Institute. Performance standards for antimicrobial susceptibility testing: 20th informational supplement. CLSI document M100-S20. Wayne: CLSI; 2010.).
PCR-based capsular typing and characterisation of the cap loci - One isolated colony of each isolate was subcultured on an HTM agar plate, and DNA was isolated from the resuspended bacteria after overnight culture, using a QIAamp DNA Mini Kit (Qiagen, Hilden, Germany), according to the manufacturer’s protocol for DNA purification for Gram-negative bacteria.
PCR-based capsular typing was performed using a set of primers described previously – HI-I/HI-II (annealing to intact copy of bexA) and a-fI/a-fII (annealing to the central type-specific region II) (van Ketel et al. 1990van Ketel RJ, de Wever B, Alphen LV. Detection of Haemophilus influenzae in cerebrospinal fluids by polymerase chain reaction DNA amplification. J Med Microbiol. 1990; 33(4): 271-6., Falla et al. 1994Falla TJ, Crook DWM, Brophy LN, Maskell D, Kroll JS, Moxon ER. PCR for capsular typing of Haemophilus influenzae. J Clin Microbiol. 1994; 32(10): 2382-6.). The first set of primer tests for the presence of bexA, which determines whether an isolate is encapsulated or non-encapsulated (van Ketel et al. 1990van Ketel RJ, de Wever B, Alphen LV. Detection of Haemophilus influenzae in cerebrospinal fluids by polymerase chain reaction DNA amplification. J Med Microbiol. 1990; 33(4): 271-6.). The second step is used to determine each of the six specific capsule types (Falla et al. 1994Falla TJ, Crook DWM, Brophy LN, Maskell D, Kroll JS, Moxon ER. PCR for capsular typing of Haemophilus influenzae. J Clin Microbiol. 1994; 32(10): 2382-6.).
We used three primers in two combinations – i.e., ORF6/BexB (3′ end junction-bexB) and ISLOUT/BexB (IS1016-bexB) – to identify the capsule polysaccharide synthesis gene structure (Leaves et al. 1995Leaves NI, Falla TJ, Crook DWM. The elucidation of novel capsular genotypes of Haemophilus influenzae type b with the polymerase chain reaction. J Med Microbiol. 1995; 43(2): 120-4.). This PCR combination (i) detects a cap locus consisting of multiple copies of cap; (ii) differentiates b- from Hib isolates with a positive amplification reaction specific to b- variants; (iii) identifies intact tandemly repeated copies of intact cap with no deletion in bexA; and (iv) identifies the partial deletion of bexA and IS1016 in at least one copy of cap.
Genotyping - Multilocus sequence typing (MLST) was performed as previously described and used to determine genetic lineage (Meats et al. 2003Meats E, Feil EJ, Stringer S, Cody AJ, Goldstein R, Kroll JS, et al. Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol. 2003; 41(4): 1623-36.). Allele and sequence type (ST) numbers were assigned by submission to the Hi MLST database (http://pubmlst.org/hinfluenzae/). MLST data were analysed against all STs found in the online database to organise the population into clonal complexes, which is defined as a group of STs in a population that shares four to seven alleles with at least one other ST in the group (Meats et al. 2003Meats E, Feil EJ, Stringer S, Cody AJ, Goldstein R, Kroll JS, et al. Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol. 2003; 41(4): 1623-36.). Bionumerics software (version 5.10; Applied Maths) was used to create minimum spanning trees (Feil et al. 2004Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacterol. 2004; 186(5): 1518-30.). We correlated pgi alleles with the expression of the capsule to test the accuracy of pgi genotyping as a surrogate for capsule typing (Anyanwu et al. 2003Anyanwu JN, Rodriguez CA, Fleming KE, Adderson EE. pgi genotyping is a surrogate for serotyping of encapsulated Haemophilus influenzae. J Clin Microbiol. 2003; 41(5): 2080-3.). The pgi allele sequences were compared with those alleles as reported on pubmlst.org/hinfluenzae.
Ethical considerations - The study was approved (CAAE 33354114.1.0000.5248) by the Ethical Committee of the Oswaldo Cruz Institute (CEP FIOCRUZ/IOC), Brazilian Ministry of Health.
RESULTS
Surveillance data - A dramatic decline in the number of Hi meningitis cases occurred following introduction of conjugate vaccine in 1999 (Fig. 1). From 1986 to 1999 and from 2000 to 2014, 2580 and 197 confirmed cases were reported, representing an average of 184 and 13 cases per year, respectively. From 1993 to 1999, 1206 reported meningitis cases (172 cases per year) were attributed to serotype b and were confirmed by culture (720; CSF = 691; blood = 29) or antigen detection (486). Subsequently, from 2000 to 2014, 197 meningitis cases were confirmed by culture (79; CSF = 54; blood = 25), antigen detection (106), or PCR (12); among them, 11 (6%) were serotype a, 103 (52%) were serotype b, and 83 (42%) were without serotype information.
: reported number of Haemophilus influenzae meningitis cases in Rio de Janeiro state, Brazil, 1986-2014.
The time periods with the serotypes, the age category, the clinical manifestations (meningitis and non-meningitis cases), and the case fatality rates (CFR) are presented in Table I. Most serotype b isolates were recovered from children aged five years and younger; however, a reduction in the proportion of cases in this age category was noticed in the vaccine era. From the year 2000, patients with haemorrhagic rash (10%; 19/197) were children under 10 years of age (70%; < 1-year-old) and were more frequently infected with serotype a. The CFR was similar for both periods, but a marked increase was observed after 2010.
PCR-based capsular typing - Using PCR, 113 typeable isolates yielded a 343-bp amplicon when primers HI-I/HI-II were used, whereas no product was amplified from 24 non-typeable isolates. Of the 72 isolates included from 1993 to 1999 originally characterised at the time of isolation as serotype b, two were determined to be b- variants and one was determined as non-encapsulated by PCR capsule typing. Of the 65 isolates recovered from the year 2000 and initially reported to be serotype b (n = 35), one was a b- variant and two were non-encapsulated. Thus, in the bacterial collection of 137 viable Hi isolates recovered from patients with meningitis (n = 118), septicaemia (n = 14), or pneumonia (n = 5) (Table I) were found, out of which 12 were serotype a (first isolate found in 2006), 101 serotype b (1993-1999 = 69; 2000-2014 = 32), three were b- variants (first isolate found in 1994), and 21 were non-encapsulated (first isolate found in 1993).
Characterisation of the cap loci - Hib isolates yielded a 3-kb product, which is an indication of a cap locus consisting of tandem repeat copies of cap, when ORF6/BexB primers were used. The ISLOUT/BexB primers produced two amplification products – a 300-bp amplicon, indicating the presence of partial deletion of IS1016-bexA, and a 1.5-kb amplicon, resultant of amplification across intact bexA. These results are consistent with a cap locus structure formed by multiple copies of cap and at least one copy of cap with an IS1016-bexA partial deletion. The b- variants were genotypically serotype b; no product was amplified with primers ORF6/BexB and only the 300-bp amplicon was amplified with primers ISLOUT/BexB indicating the absence of intact bexA. PCR-based methods showed intact tandem-repeated copies of the cap locus with no deletion of bexA in Hi serotype a (Hia) isolates. The ORF6/BexB primers amplified a 3-kb product, whereas primers ISLOUT/BexB yielded only a 1.5-kb product. The PCR results of non-encapsulated isolates showed no amplification with these primers.
Genotyping - By MLST, Hib (61%; 62/101) and b- (67%; 2/3) isolates were ST-6 or a ST of the same clonal complex (four to seven identical alleles), of which 10 (67%; 10/15) were novel (Fig. 2), and a single isolate, ST-913, which is genetically distant to the ST-6 clonal complex. H. influenzae serotype a isolates were ST-23 (83%; 10/12) or two new STs closely related to the ST-23 clonal complex (Fig. 2) – ST-1348 (a single-locus variant of ST-23 that differs at frdB) and ST-1352 (a double-locus variant of ST-23 that differs at frdB and recA). Non-encapsulated isolates were non-clonal and distinct from the encapsulated isolates, with the exception of a single isolate of the ST-6 (Fig. 2). New STs were present across both periods of the study – before and after the vaccine introduction.
: Haemophilus influenzae clustered by multilocus sequence typing clonal complex, labelled by sequence type, colour coded by serotype.
Capsule-associated pgi alleles were found among encapsulated isolates. All Hia isolates shared a single pgi allele (allele 11), which is conserved within the ST-23 serotype a isolates. Mostly Hib had pgi allele 7 (82%) or other alleles previously reported for this serotype (alleles: 3, 29, 31, and 89); b- variant isolates also had pgi allele 7. Non-encapsulated Hi isolates had pgi alleles associated primarily with non-encapsulated isolates, of which one was novel (allele 226; ST-1357). However, one isolate (ST-6) had a pgi allele 7 and another (ST-1351) had a pgi allele 28, which are associated primarily with serotype b and e, respectively.
Antimicrobial susceptibility testing - All isolates were susceptible to ceftriaxone (MICs, 0.002-0.016 µg/mL), rifampicin (MICs, 0.006-0.75 µg/mL), azithromycin (MICs, 0.032-4 µg/mL), and amoxicillin-clavulanic acid (MICs, 0.125-1 µg/mL). The results of antimicrobial susceptibility testing of resistant isolates are shown in Table II. Resistance was detected for ampicillin (MICs, 4- > 256 µg/mL), cotrimoxazole (MICs, 1- > 32 µg/mL), and chloramphenicol (MICs, 8-16 µg/mL). Notably, all chloramphenicol-resistant isolates were recovered before the year 2002.
DISCUSSION
Hib conjugate vaccine has led to a marked and sustained reduction in the incidence of serotype b infection wherever it was introduced (Peltola 2000Peltola H. Worldwide Haemophilus influenzae type b disease at the beginning of the 21st century: global analysis of the disease burden 25 years after the use of the polysaccharide vaccine and a decade after the advent of conjugates. Clin Microbiol Rev. 2000; 13(2): 302-17.). The serotype-specific nature of the vaccine and the reduction in carriage of serotype b has raised concerns about the possibility of capsule replacement following introduction of vaccine. However, sustained increase in the invasive disease caused by non-serotype b strains has not been observed (Ladhani et al. 2008Ladhani S, Ramsay ME, Chandra M, Slack MP, the European Union Invasive Bacterial Infection Surveillance participants. No evidence for Haemophilus influenzae serotype replacement in Europe after introduction of the Hib conjugate vaccine. Lancet Infect Dis. 2008(5); 8: 275-6.). A few reports have shown that such an increase does not correlate with meningitis cases, e.g., isolates are recovered from older adults, which has led to a change in the epidemiological pattern of invasive Hi disease. In Brazil, the same scenario has been reported following the widespread use of the conjugate vaccine in infancy since 1999; there is no evidence suggesting capsule serotype replacement or increase in meningitis due to non-encapsulated Hi (Lima et al. 2010Lima JBT, Ribeiro GS, Cordeiro SM, Gouveia EL, Salgado K, Spratt BG, et al. Poor clinical outcome for meningitis caused by Haemophilus influenzae serotype a strains containing the IS1016-bexA deletion. J Infect Dis. 2010; 202(10): 1577-84., Zanella et al. 2011Zanella RC, Bokermann S, Andrade ALSS, Flannery B, Brandileone MCC. Changes in serotype distribution of Haemophilus influenzae meningitis isolates identified through laboratory-based surveillance following routine childhood vaccination against H. influenzae type b in Brazil. Vaccine. 2011; 29(48): 8937-42.). Nevertheless, a temporary increase in non-b serotypes was observed in north-east Brazil (Ribeiro et al. 2007Ribeiro GS, Lima JB, Reis JN, Gouveia EL, Cordeiro SM, Lobo TS, et al. Haemophilus influenzae meningitis 5 years after introduction of the Haemophilus influenzae type b conjugate vaccine in Brazil. Vaccine. 2007; 25(22): 4420-8.) and an increase in meningitis cases caused by non-encapsulated Hi was also reported (Zanella et al. 2011Zanella RC, Bokermann S, Andrade ALSS, Flannery B, Brandileone MCC. Changes in serotype distribution of Haemophilus influenzae meningitis isolates identified through laboratory-based surveillance following routine childhood vaccination against H. influenzae type b in Brazil. Vaccine. 2011; 29(48): 8937-42.).
Regardless, the reduction of Hib disease has led to the occurrence of a higher proportion of cases attributable to non-serotype b or non-encapsulated isolates. These events, together with the reduction of incidence in children, may cause an upward shift in the age distribution, as a consequence of the tendency of non-encapsulated and some encapsulated isolates other than serotype a to affect the older age groups (Livorsi et al. 2012Livorsi DJ, Macneil JR, Cohn AC, Bareta J, Zansky S, Petit S, et al. Invasive Haemophilus influenzae in the United States, 1999-2008: epidemiology and outcomes. J Infect. 2012; 65(6): 496-504.).
Although Hi became a relatively rare cause of community-acquired invasive bacterial infection in Rio de Janeiro after the introduction of the Hib conjugate vaccine, the isolates recovered from patients were more diverse, with the emergence of serotype a isolates during 2000s. A limitation of our study is that a substantial proportion of isolates not tested lack serotype information in the vaccine era. Improvement in surveillance could include implementation of more sensitive laboratory methods, such as, PCR-based methods (Satola et al. 2007Satola SW, Collins JT, Napier R, Farley MM. Capsule gene analysis of invasive Haemophilus influenzae: accuracy of serotyping and prevalence of IS1016 among nontypeable isolates. J Clin Micobiol. 2007; 45(10): 3230-8.), for more accurate estimates of the disease burden. Additionally, the reporting could be expanded to all the patients with invasive diseases, not just those with Hi meningitis. In addition, it is likely that our surveillance system substantially underestimated the true burden of Hi infection in our population.
The proportion of isolates characterised was low compared with the total number of cases reported, in particular before the introduction of the conjugate vaccine. Nevertheless, the molecular typing results are likely to be a representative of meningitis cases caused by Hi in Rio de Janeiro, taking into account the clonal nature of this species and the low frequency of serotypes other than serotypes a or b in Brazil (Zanella et al. 2011Zanella RC, Bokermann S, Andrade ALSS, Flannery B, Brandileone MCC. Changes in serotype distribution of Haemophilus influenzae meningitis isolates identified through laboratory-based surveillance following routine childhood vaccination against H. influenzae type b in Brazil. Vaccine. 2011; 29(48): 8937-42.).
We present here for the first time the results of genotyping and cap locus characterisation of a collection of Hi isolates from Brazil, which revealed a genetically diverse population of encapsulated and non-encapsulated isolates causing invasive disease after the introduction of the conjugate vaccine. We demonstrated that Hia and Hib isolates belonged to two distinct clonal complexes, cc23 and cc6, respectively. In both clonal complexes, new STs were identified, which is consistent with an evolved population. ST-23 lineage has frequently been associated with serotype a in different countries, and belongs to a cluster of related STs (Meats et al. 2003Meats E, Feil EJ, Stringer S, Cody AJ, Goldstein R, Kroll JS, et al. Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol. 2003; 41(4): 1623-36., Ulanova & Tsang 2014Ulanova M, Tsang RSW. Haemophilus influenzae serotype a as a cause of serious invasive infections. Lancet Infect Dis. 2014; 14(1): 70-82.). ST-23 and unrelated ST-4 serotype a have been described as those causing meningitis in Brazil (Lima et al. 2010)Lima JBT, Ribeiro GS, Cordeiro SM, Gouveia EL, Salgado K, Spratt BG, et al. Poor clinical outcome for meningitis caused by Haemophilus influenzae serotype a strains containing the IS1016-bexA deletion. J Infect Dis. 2010; 202(10): 1577-84.. ST-6 represents the major clonal group of serotype b recovered from patients with invasive disease (Meats et al. 2003)Meats E, Feil EJ, Stringer S, Cody AJ, Goldstein R, Kroll JS, et al. Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol. 2003; 41(4): 1623-36.. MLST of Brazilian Hib has not been previously published. We identified only three spontaneously occurring capsular deficient mutants of Hib (b-), all belonging to cc6. These b- variants have also been recovered from patients with invasive disease at a low frequency in other studies (Satola et al. 2007Satola SW, Collins JT, Napier R, Farley MM. Capsule gene analysis of invasive Haemophilus influenzae: accuracy of serotyping and prevalence of IS1016 among nontypeable isolates. J Clin Micobiol. 2007; 45(10): 3230-8., Zanella et al. 2011)Zanella RC, Bokermann S, Andrade ALSS, Flannery B, Brandileone MCC. Changes in serotype distribution of Haemophilus influenzae meningitis isolates identified through laboratory-based surveillance following routine childhood vaccination against H. influenzae type b in Brazil. Vaccine. 2011; 29(48): 8937-42.. The non-encapsulated isolates showed more genetic diversity than encapsulated ones and were generally recovered from very young children. Interestingly, two of these isolates shared a pgi allele with serotypes b or e, and belonged to STs, which clustered within the clonal complex normally associated with these serotypes (Meats et al. 2003)Meats E, Feil EJ, Stringer S, Cody AJ, Goldstein R, Kroll JS, et al. Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol. 2003; 41(4): 1623-36.. This raises the possibility that these isolates may be Hib or e that have lost the capsule polysaccharide synthesis genes (Ogilvie et al. 2001)Ogilvie C, Omikunle A, Wang Y, St. Geme III JW, Rodriguez CA, Adderson EE. Capsulation loci of non-serotype b encapsulated Haemophilus influenzae. J Infect Dis. 2001; 184(2): 144-9..
It has been suggested that the incorporation of the IS1016-bexA mutation increased the virulence of serotype a isolates in north-east Brazil (Lima et al. 2010Lima JBT, Ribeiro GS, Cordeiro SM, Gouveia EL, Salgado K, Spratt BG, et al. Poor clinical outcome for meningitis caused by Haemophilus influenzae serotype a strains containing the IS1016-bexA deletion. J Infect Dis. 2010; 202(10): 1577-84.). This mutation was observed in isolates of one of the two PFGE patterns of serotype a, which was ST-4, and was associated with a worse prognosis. In 2007, one ST-4 serotype a isolate with the IS1016-bexA mutation was recovered from a patient in Canada (Sill et al. 2007Sill ML, Zhou J, Law DKS, Lorange M, Ringuette L, Bekal S, et al. Molecular characterization of four Haemophilus influenzae serotype a strains isolated from patients in Quebec, Canada. Can J Microbiol. 2007; 53(10): 1191-4.). This mutation was also found in serotype a isolates recovered from patients with invasive disease in the US and West Africa (Kroll et al. 1994Kroll JS, Moxon ER, Loynds BM. Natural genetic transfer of a putative virulence-enhancing mutation to Haemophilus influenzae type a. J Infect Dis. 1994; 169(3): 676-9., Adderson et al. 2001Adderson EE, Byington CL, Spencer L, Kimball A, Hindiyeh M, Carroll K, et al. Invasive serotype a Haemophilus influenzae infections with a virulence genotype resembling Haemophilus influenzae type b: emerging pathogen in the vaccine era? Pediatrics. 2001; 108(1): E18., Kapogiannis et al. 2005Kapogiannis BG, Satola S, Keyserling HL, Farley MM. Invasive infections with Haemophilus influenzae serotype a containing an IS1016-bexA partial deletion: possible association with virulence. Clin Infect Dis. 2005; 41(11): e97-103.). The occurrence of a severe disease resembling meningococcemia has been reported in the presence of the IS1016-bexA deletion (Adderson et al. 2001Adderson EE, Byington CL, Spencer L, Kimball A, Hindiyeh M, Carroll K, et al. Invasive serotype a Haemophilus influenzae infections with a virulence genotype resembling Haemophilus influenzae type b: emerging pathogen in the vaccine era? Pediatrics. 2001; 108(1): E18.). However, invasive Hia isolates have not shown presence of IS1016-bexA deletion in other studies (Adderson et al. 2001Adderson EE, Byington CL, Spencer L, Kimball A, Hindiyeh M, Carroll K, et al. Invasive serotype a Haemophilus influenzae infections with a virulence genotype resembling Haemophilus influenzae type b: emerging pathogen in the vaccine era? Pediatrics. 2001; 108(1): E18., Hammitt et al. 2005Hammitt LL, Block S, Hennessy TW, Debyle C, Peters H, Parkinson A, et al. Outbreak of invasive Haemophilus influenzae serotype a disease. Pediatr Infect Dis J. 2005; 24(5): 453-6., Tsang et al. 2006Tsang RSW, Mubareka S, Sill ML, Wylie J, Skinner S, Law DKS. Invasive Haemophilus influenzae in Manitoba, Canada, in the post vaccination era. J Clin Microbiol. 2006; 44(4): 1530-5.). Regardless, the clinical aspects of serotype a disease closely resemble to those of serotype b.
In this study, we did not confirm an association of IS1016-bexA deletion with outcome. The IS1016-bexA partial deletion was only observed among serotype b isolates, which produced a similar or lower CFR compared with serotype a isolates. Furthermore, serotype a isolates were more often associated with a haemorrhagic rash – a clinical sign of septicaemia and an immediate indicator of prognosis. Together, these data reinforce the view that properties other than IS1016-bexA partial deletion may contribute to the development of severe invasive disease, including increased capsular polysaccharide production, variations in gene expression, lipopolysaccharide sialylation, or host factors (Ogilvie et al. 2001Ogilvie C, Omikunle A, Wang Y, St. Geme III JW, Rodriguez CA, Adderson EE. Capsulation loci of non-serotype b encapsulated Haemophilus influenzae. J Infect Dis. 2001; 184(2): 144-9., Gilsdorf et al. 2004Gilsdorf JR, Marrs CF, Foxman B. Haemophilus influenzae: genetic variability and natural selection to identify virulence factors. Infect Immun. 2004; 72(5): 2457-61.).
Notably, our CFR was high and increased after 2010, which may not be related to the properties of Hi. Thus, it seems to be necessary to evaluate the independent factors associated with a high CFR. The time lapse after disease onset influences the outcome in patients with bacterial meningitis or septicaemia, making a poor prognosis possibly related to the degree of alertness of the attendant physician, poor access to hospitals, delayed treatment, or limited availability of supportive intensive care.
β-lactam resistance in Hi emerged in the early 1970s and spread globally. The proportion of ampicillin resistance varies by geographical area, with resistance ranging from 3% to 65% (Tristram et al. 2007Tristram S, Jacobs MR, Appelbaum PC. Antimicrobial resistance in Haemophilus influenzae. Clin Microbiol Rev. 2007; 20(2): 368-89.). It seems that ampicillin resistance is related only to β-lactamase production in the isolates tested, since all β-lactam resistant isolates were susceptible to amoxicillin-clavulanic acid. The β-lactamase-positive isolates studied were resistant to both ampicillin and chloramphenicol, but after 2001, chloramphenicol resistance was not detected. Ampicillin resistance seems to be more commonly found in Hib than in serotype a, as shown in this study (Shuel et al. 2014Shuel M, Whyte K, Drew T, Wylie J, Lefebvre B, Hoang L, et al. Differential susceptibility of invasive Haemophilus influenzae serotype a and serotype b to ampicillin and other commonly prescribed antibiotics. Letters Appl Microbiol. 2014; 59(2): 193-9.).
Here, we demonstrated the need to implement an enhanced surveillance system to continue monitoring the impact of Hib conjugate vaccine. Thus, an improvement in typing isolates, full population-based information on incidence, and continued molecular surveillance for invasive Hi disease is necessary, where the disease is still with us and has a great chance to cause the patient’s death.
ACKNOWLEDGEMENTS
To Sarah Satola, for her thoughtful review of the manuscript, and all the staff at the laboratories contributing with isolates. We are thankful to Rio de Janeiro state Department of Health and Central Laboratory Noel Nutels technical staff, for support and help with data collection. We also thank use of the Haemophilus influenzae MLST website (http://pubmlst.org/hinfluenzae/).
REFERENCES
- Adderson EE, Byington CL, Spencer L, Kimball A, Hindiyeh M, Carroll K, et al. Invasive serotype a Haemophilus influenzae infections with a virulence genotype resembling Haemophilus influenzae type b: emerging pathogen in the vaccine era? Pediatrics. 2001; 108(1): E18.
- Anyanwu JN, Rodriguez CA, Fleming KE, Adderson EE. pgi genotyping is a surrogate for serotyping of encapsulated Haemophilus influenzae J Clin Microbiol. 2003; 41(5): 2080-3.
- CLSI - Clinical Laboratory Standard Institute. Performance standards for antimicrobial susceptibility testing: 20th informational supplement. CLSI document M100-S20. Wayne: CLSI; 2010.
- Falla TJ, Crook DWM, Brophy LN, Maskell D, Kroll JS, Moxon ER. PCR for capsular typing of Haemophilus influenzae J Clin Microbiol. 1994; 32(10): 2382-6.
- Feil EJ, Li BC, Aanensen DM, Hanage WP, Spratt BG. eBURST: inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J Bacterol. 2004; 186(5): 1518-30.
- Gilsdorf JR, Marrs CF, Foxman B. Haemophilus influenzae: genetic variability and natural selection to identify virulence factors. Infect Immun. 2004; 72(5): 2457-61.
- Hammitt LL, Block S, Hennessy TW, Debyle C, Peters H, Parkinson A, et al. Outbreak of invasive Haemophilus influenzae serotype a disease. Pediatr Infect Dis J. 2005; 24(5): 453-6.
- Kapogiannis BG, Satola S, Keyserling HL, Farley MM. Invasive infections with Haemophilus influenzae serotype a containing an IS1016-bexA partial deletion: possible association with virulence. Clin Infect Dis. 2005; 41(11): e97-103.
- Kelly DF, Moxon ER, Pollard AJ. Haemophilus influenzae type b conjugate vaccines. Immunology. 2004; 113(2): 163-74.
- Kroll JS, Loynds B, Brophy LN, Moxon ER. The bex locus in encapsulated Haemophilus influenzae: a chromosomal region involved in capsule polysaccharide export. Mol Microbiol. 1990; 4(11): 1853-62.
- Kroll JS, Moxon ER, Loynds BM. Natural genetic transfer of a putative virulence-enhancing mutation to Haemophilus influenzae type a. J Infect Dis. 1994; 169(3): 676-9.
- Ladhani S, Ramsay ME, Chandra M, Slack MP, the European Union Invasive Bacterial Infection Surveillance participants. No evidence for Haemophilus influenzae serotype replacement in Europe after introduction of the Hib conjugate vaccine. Lancet Infect Dis. 2008(5); 8: 275-6.
- Leaves NI, Falla TJ, Crook DWM. The elucidation of novel capsular genotypes of Haemophilus influenzae type b with the polymerase chain reaction. J Med Microbiol. 1995; 43(2): 120-4.
- Lima JBT, Ribeiro GS, Cordeiro SM, Gouveia EL, Salgado K, Spratt BG, et al. Poor clinical outcome for meningitis caused by Haemophilus influenzae serotype a strains containing the IS1016-bexA deletion. J Infect Dis. 2010; 202(10): 1577-84.
- Livorsi DJ, Macneil JR, Cohn AC, Bareta J, Zansky S, Petit S, et al. Invasive Haemophilus influenzae in the United States, 1999-2008: epidemiology and outcomes. J Infect. 2012; 65(6): 496-504.
- Meats E, Feil EJ, Stringer S, Cody AJ, Goldstein R, Kroll JS, et al. Characterization of encapsulated and noncapsulated Haemophilus influenzae and determination of phylogenetic relationships by multilocus sequence typing. J Clin Microbiol. 2003; 41(4): 1623-36.
- Ogilvie C, Omikunle A, Wang Y, St. Geme III JW, Rodriguez CA, Adderson EE. Capsulation loci of non-serotype b encapsulated Haemophilus influenzae J Infect Dis. 2001; 184(2): 144-9.
- Peltola H. Worldwide Haemophilus influenzae type b disease at the beginning of the 21st century: global analysis of the disease burden 25 years after the use of the polysaccharide vaccine and a decade after the advent of conjugates. Clin Microbiol Rev. 2000; 13(2): 302-17.
- Ribeiro GS, Lima JB, Reis JN, Gouveia EL, Cordeiro SM, Lobo TS, et al. Haemophilus influenzae meningitis 5 years after introduction of the Haemophilus influenzae type b conjugate vaccine in Brazil. Vaccine. 2007; 25(22): 4420-8.
- Satola SW, Collins JT, Napier R, Farley MM. Capsule gene analysis of invasive Haemophilus influenzae: accuracy of serotyping and prevalence of IS1016 among nontypeable isolates. J Clin Micobiol. 2007; 45(10): 3230-8.
- Satola SW, Schirmer PL, Farley MM. Complete sequence of the cap locus of Haemophilus influenzae serotype b and nonencapsulated b capsule-negative variants. Infect Immun. 2003; 71(6): 3639-44.
- Shuel M, Whyte K, Drew T, Wylie J, Lefebvre B, Hoang L, et al. Differential susceptibility of invasive Haemophilus influenzae serotype a and serotype b to ampicillin and other commonly prescribed antibiotics. Letters Appl Microbiol. 2014; 59(2): 193-9.
- Sill ML, Zhou J, Law DKS, Lorange M, Ringuette L, Bekal S, et al. Molecular characterization of four Haemophilus influenzae serotype a strains isolated from patients in Quebec, Canada. Can J Microbiol. 2007; 53(10): 1191-4.
- Sukupolvi-Petty S, Grass S, St. Geme III JW. The Haemophilus influenzae type b hcsA and hcsB gene products facilitate transport of capsular polysaccharide across the outer membrane and are essential for virulence. J Bacteriol. 2006; 188(11): 3870-7.
- Tristram S, Jacobs MR, Appelbaum PC. Antimicrobial resistance in Haemophilus influenzae Clin Microbiol Rev. 2007; 20(2): 368-89.
- Tsang RSW, Mubareka S, Sill ML, Wylie J, Skinner S, Law DKS. Invasive Haemophilus influenzae in Manitoba, Canada, in the post vaccination era. J Clin Microbiol. 2006; 44(4): 1530-5.
- Tuyama M, Boente RF, Rebelo MC, Igreja RP, Barroso DE. The utility of the polymerase chain reaction assay for aetiologic definition of unspecified bacterial meningitis cases. Mem Inst Oswaldo Cruz. 2008; 103(2): 138-42.
- Ulanova M, Tsang RSW. Haemophilus influenzae serotype a as a cause of serious invasive infections. Lancet Infect Dis. 2014; 14(1): 70-82.
- van Eldere J, Brophy L, Loynds B, Celis P, Hancock I, Carman S, et al. Region II of the Haemophilus influenzae type b capsulation locus is involved in serotype-specific polysaccharide synthesis. Mol Microbiol. 1995; 15(1): 107-18.
- van Ketel RJ, de Wever B, Alphen LV. Detection of Haemophilus influenzae in cerebrospinal fluids by polymerase chain reaction DNA amplification. J Med Microbiol. 1990; 33(4): 271-6.
- Zanella RC, Bokermann S, Andrade ALSS, Flannery B, Brandileone MCC. Changes in serotype distribution of Haemophilus influenzae meningitis isolates identified through laboratory-based surveillance following routine childhood vaccination against H. influenzae type b in Brazil. Vaccine. 2011; 29(48): 8937-42.
- Zwahlen A, Kroll JS, Rubin LG, Moxon ER. The molecular basis of pathogenicity in Haemophilus influenzae: comparative virulence of genetically-related capsular transformants and correlation with changes at the capsulation locus cap Microb Pathog. 1989; 7(3): 225-35.
-
Financial support: Fogarty International Center Global Infectious Diseases Research Training Program grant, National Institutes of Health, to the University of Pittsburgh (D43TW006592).
Publication Dates
-
Publication in this collection
16 Feb 2017 -
Date of issue
Mar 2017
History
-
Received
26 Aug 2016 -
Accepted
23 Nov 2016