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Prospection of strains of Bacillus sporogenes in the digestive tract of native crustaceans and characterization of the probiotic potential

Abstract

The cultivation of marine shrimp is one of the fastest growing activities in the world. However, the emergence of diseases has resulted in a decrease in production and losses for the sector. Probiotics emerged as an option to the use of antibiotics to control these pathogens. The efficiency of applying this technology depends on the characteristics of the bacterial agents and their bioavailability in the shrimp intestine. The objective is to evaluate the viability and efficiency of bacteria isolated from the digestive tract of healthy crustaceans as probiotic agents in the cultivation of shrimp Litopenaeus vannamei. Eighteen strains of the genus Bacillus belonging to the following species were tested: Bacillus sp., B. cereus, B. thuringiensis, B. circulans, B. megaterium, B. subtilis and B. agaridevorans. Bacterial isolates were subjected to characterization as potential probiotics. The test results were considered satisfactory; thus, the tested strains have potential for use as probiotics in shrimp culture. Treatments that used of the genus Bacillus had reduced growth of the genus Vibrio after infection, both in the intestinal contents and in the intestine. With the results obtained, it can be suggested that further research be carried out on the probiotic potential of Bacillus sp.

Key words
Diseases; pathogens; shrimp; Vibrio

INTRODUCTION

Shrimp farming is an important economic activity with satisfactory financial returns, in addition to generating jobs and being responsible for a product of great economic value (Igarashi 2022IGARASHI MA. 2022. Sinopse sobre os aspectos do potencial da produção e prospectos para o desenvolvimento do cultivo de camarão marinho no Brasil, especialmente no nordeste. Rev Semiárido Visu 10(3): 308-330.). These animals receive balanced feed to ensure accelerated and healthy growth. Water quality is a factor that contributes to the health and zootechnical performance of farmed animals. Preventing the emergence of diseases (Boyd 2017BOYD CE. 2017. General Relationship Between Water Quality and Aquaculture Performance in Ponds. Fish Diseases: Prevention and Control Strategies, p. 147-166.).

The manipulation of antibiotics in the treatment of diseases in shrimp farming is ordinary, but the indiscriminate use leads to the emergence of resistant bacterial strains, this has stimulated the study of more effective therapeutic and prophylactic measures, environmentally correct and that do not bring harm to human health, such as use of plants, nanoparticles, and probiotics, which cause low side effects (Aghamohammad & Rohani 2023AGHAMOHAMMAD S & ROHANI M. 2023. Antibiotic resistance and the alternatives to conventional antibiotics: The role of probiotics and microbiota in combating antimicrobial resistance. Microbiol Res 267: 127275.).

Between the bacteria, Vibrio is Gram-negative genus, naturally found in marine environments, some microorganisms belonging to this genus are considered pathogens of the marine shrimp Litopenaeus vannamei, so they are responsible for diseases in shrimp farms (Ji et al. 2020JI Q, WANG S, MA J & LIU Q. 2020. A review: Progress in the development of fish Vibrio spp. Vaccines. Immunol Lett 226: 46-54.). Outbreaks of vibriosis are commonly noticed in cultivation, caused by imbalance in the population of these microorganisms. The species Vibrio harveyi, Vibrio alginolyticus and Vibrio parahaemolyticus are frequently associated with diseases in shrimp farming (Yin et al. 2022YIN X, ZHUANG X, LIAO M, HUANG L, CUI Q, LIU C, DONG W, WANG F, LIU Y & WANG W. 2022. Transcriptome analysis of Pacific white shrimp (Litopenaeus vannamei) hepatopancreas challenged by Vibrio alginolyticus reveals lipid metabolic disturbance. Fish Shellfish Immunol 123: 238-247.).

The use of beneficial bacteria has been recognized as a possibility to abandon the use of antibiotics in cultures, that is why, the use of these microbial products has grown more and more as a disease management strategy (Gatesoupe 1999GATESOUPE FJ. 1999. The use of probiotics in aquaculture. Aquaculture 180: 147-165.). The same author defined probiotics as live microorganisms that, when administered, colonize the intestinal tract of the host, improving the health of cultured animals. Benefits include modifying the host’s bacterial community or environment, as well as enhancing the host’s immune response against disease (Verschuere et al. 2000VERSCHUERE L, ROMBAUT G, SORGELOOS P & VERSTRAETE W. 2000. Probiotic bacteria as biological control agents in aquaculture. Microbiol Mol Biol Rev 64: 655-671.).

The use of probiotics is a promising prevention method developed to oppose diseases, based on the principle of exclusion by competition and/or acting as immunostimulants (Fuller 1992FULLER R. 1992. Probiotics: the scientific basis. Roy Fuller Ed. London: Chapman & Hall, 398 p.). New products are routinely formulated. Probiotic strains are adapted, through natural processes, for use in aquaculture, reaching the product reach the desired effect (Kesarcodi-Watson et al. 2008KESARCODI-WATSON A, KASPAR H, LATEGAN MJ & GIBSON L. 2008. Probiotics in aquaculture: The need, principles and mechanisms of action and screening processes. Aquaculture 274(1): 1-14.). The use of probiotics during cultivation is useful to reduce the negative impacts caused by chemicals and improve water quality (Hlordzi et al. 2020HLORDZI V, KUEBUTORNYE FKA, AFRIYIE G, ABARIKE ED, LU Y, CHI S & ANOKYEWAA MA. 2020. The use of Bacillus species in maintenance of water quality in aquaculture: A review. Aquacult. Rep 18: 100503.).

However, bacteria of the genus Bacillus belong to the Bacillaceae family. They are effective in producing enzymes that degrade many organic substrates (Madigan et al. 2002MADIGAN MT, MARTINKO JM & PARKER J. 2002. Brock biology of microorganisms. 10th ed., Upper Saddle River: Prentice Hall, 991 p.). They are the main Gram-positive bacteria tested for use in aquaculture as probiotics (Rengpipat et al. 1998RENGPIPAT S, PHIANPHAK W, PIYATIRATITIVORAKUL S & MENASAVETA P. 1998. Effects of a probiotic bacterium in black tiger shrimp Penaeus monodon survival and growth. Aquaculture 167(4): 301-313.). Being able to produce antibiotic substances during sporulation, we can highlight bacitracins, polymyxin, tyrocidin, gramicidin and circulin (Madigan et al. 2004MADIGAN TM, MARTINKO MJ & PARKER J. 2004. Brock biology of microorganisms. 11th ed., Upper Saddle River: Prentice Hall, 1036 p.). Species of this genus are widely used as probiotics in shrimp farming and in commercial formulations (Vieira et al. 2013VIEIRA FDN, JATOBÁ A, MOURIÑO JLP, VIEIRA EA, SOARES M, SILVA BCD, SEIFFERT WQ, MARTINS ML & VINATEA LA. 2013. In vitro selection of bacteria with potential for use as probiotics in marine shrimp culture. Pesqui Agropecu Bra 48(8): 998-1004.). These products have been very effective in preventing disease using a variable number of Bacillus species.

The main objective of this study was to investigate the viability and efficiency of bacteria isolated from the digestive tract of healthy crustaceans as probiotic agents in the cultivation of shrimp Penaeus vannamei.

MATERIALS AND METHODS

Origin of strains

The isolation of Bacillus spp. was made from the digestive tract (DT) of wild crustaceans (soft crab, crab, and shrimp) collected in the estuary of the Pacoti River (Ceará). The animals were visually inspected for signs of disease, and soon after, they were stunned in an ice bath and sacrificed for intestinal dissection. The organs of each animal were processed separately, homogenized, and diluted in 0.85% (w/v) saline solution. The samples were conditioned at a temperature of 70ºC for 1h and then plated on Nutrient Agar medium containing 1.5% (w/v) sodium chloride and incubated in an oven at 30ºC for 48 h. The characteristic Bacillus colonies were isolated, and the form and purity of the cultures confirmed by microscopy, after the Gram staining technique.

Extraction, amplification and sequencing of cultures

The total DNA of the strains was extracted using the Wizard® Genomic Purification Kit (Promega) and following the protocol recommended by the manufacturer. Amplification of the 16S rRNA gene was performed using universal primers fD1 [5’-CAACAGAGT TTGATCCTGGCTCAG-3’] and rD1 [5’-GCTTAAGGAGGTGATCCAGCC-3’] (Weisburg et al. 1991WEISBURG WG, BARUS SM, PELLETIER DA & LANE DJ. 1991. 16S ribossomal DNA amplification for phylogenetic study. J Bacteriol 173: 697-703.) and amplification kit (INVITROGEN®), as recommended. Sequencing of the 16S rRNA gene was performed bidirectionally, using the modified Sanger method (Hillis et al. 1996HILLIS DM, MORITZ C & MABLE BK. 1996. Molecular Systematics. 2nd ed., Sunderland: Sinauer Associates, 655 p.). PCR products were purified with the Wizard®SV Gel and PCR Clean-Up Systems kit (PROMEGA®). The series produced were examined from alignment with previously published sequences, available in the GenBank database of the National Center for Biotechnology Information. For alignment, the Clustal X program, version 1.83, was used.

Characterization of potential as probiotics in shrimp farming

Cultures were subjected tests to determine tolerance to different media conditions: temperatures (35, 40, 45 and 50°C); pH in the medium (3.0, 5.0, 7.0 and 9.0) (Cai et al. 1999CAI Y, SUYANANDANA P, SAMAND P & BENNO Y. 1999. Classification and characterization of lactic acid bacteria isolated from the intestines of common carp and freshwater prawns. J Gen Appl Microbiol 45: 177-184.); sodium chloride concentration: <0.5, 3, 5 and 10% (w/v) NaCl (Vieira et al. 2013VIEIRA FDN, JATOBÁ A, MOURIÑO JLP, VIEIRA EA, SOARES M, SILVA BCD, SEIFFERT WQ, MARTINS ML & VINATEA LA. 2013. In vitro selection of bacteria with potential for use as probiotics in marine shrimp culture. Pesqui Agropecu Bra 48(8): 998-1004.). The cultures were characterized according to the susceptibility profile to the antimicrobials commonly used in aquaculture: Chloramphenicol 30 µg (CLO), Oxytetracycline 10 µg (OXI), Erythromycin 15 µg (ERI), Sulfazotrim 25 µg (SUT) and Ampicillin 10µg (AMP), following guidelines of Clinical & Laboratory Standards Institute (CLSI 2010CLSI. CLINICAL AND LABORATORY STANDARDS INSTITUTE. 2010. Performance standards for antimicrobial susceptibility testing; Twentieth informational supplement. M100-S19. CLSI: Wayne 29(3): 149 p.). The enzymatic profiles of cultures related to virulence potential were also characterized. The production of elastase exoenzymes (Rust et al. 1994RUST L, MESSING CR & IGLEWSKI BH. 1994. Elastase assays. Methods Enzymol 235(1): 554-562.); gelatinase, caseinase, phospholipase lipase (Rodrigues et al. 1993RODRIGUES DP, RIBEIRO RV, ALVES RM & HOFER E. 1993. Evaluayion of virulence factors in environmental isolates of Vibrio species. Mem Int Oswaldo Cruz 88(4): 589-592.); and β-hemolysis (Furniss et al. 1979FURNISS AL, LEE JV & DONOVAN TJ. 1979. The Vibrio. Monograph Series. London: Public Health Laboratory Service, 58 p.) inoculating the cultures in media with a defined specific substrate for inducing enzyme production.

Tests for antagonistic activity against Vibrio harveyi

Cultures were exposed to a strain of V. harveyi to determine the antagonistic effect against a potential pathogen of farmed marine crustaceans. The tests were carried out using the Agar Plug Diffusion method, which consists of removing a circle of agar from a plate previously added with the test strain. This agar circle is then placed on the surface of the plate inoculated with the indicator strain. The result was seen by the formation of a halo from the slot with the Bacillus isolate (Durand et al. DURAND GA, RAOULT D & DUBOURG G 2019. Antibiotic discovery: History, methods and perspectives. Int J Antimicrob Agents 53(4): 371-382.2019).

Aggregation test

Cultures were tested for their ability to adhere to surfaces. For this, they were grown in test tubes with Tryptic Soy Both 1% (w/v) NaCl culture medium, incubated for 24 h at 35°C, and after discarding the bacterial culture, the tubes were washed with distilled water, exposed to 1% (w/v) safranin solution per one minute following the protocol described by Christensen et al. 1982CHRISTENSEN GD, SIMPSON WA, BISNO AL & BEACHEY EH. 1982. Adherence of slime-producing strains of Staphylococcus epidermidis to smooth surfaces. Infect Immun 37(1): 318-326..

In vivo tests

Based on the results of the in vitro tests, cultures were chosen for the challenge in culture with animals. Characteristics related to the reduced number of exoenzymes related to virulence, antagonism against the potential pathogen and ability to adhere to surfaces were considered prerequisites for the choice. Thus, four strains were selected to carry out the challenge test. The four cultures were tested together forming a probiotic bacterial consortium and one of them was tested alone as a monoculture probiotic.

Bioencapsulation of strains

The bacterial consortium and the probiotic monoculture strain were submitted to a bioencapsulation process to be offered to the shrimp. In this procedure, a solution of 120 mL of 1% (w/v) sodium alginate was kept in a magnetic stirrer for three hours, for the dissolution of the compound. Then, 80 mL of 1% (w/v) NaCl inoculated with the Bacillus spp. strain was added or bacterial consortium to be tested, at a concentration of 108 CFU mL-1. This mixture was added to a 2% (w/v) calcium chloride solution with a manual sprinkler, so that there was micropearlization of the particles. The micropearls were placed overnight in the calcium chloride solution, then filtered and washed with distilled water. After being lyophilized, they were placed in sterilized bottles and stored at room temperature.

After one week of storage, a viability test of the micropearlized probiotic strains was performed. Thus, 0.1g of the product was diluted and inoculated on the surface of Nutrient Agar 1.5% (w/v) NaCl medium and incubated in an oven at 35°C for 24 h. The grown colonies were fished and subjected to Gram staining and taken to the microscope to verify the characteristic morphology of the genus Bacillus.

Challenge test conditions

The experiment was carried in Center for Studies in Coastal Aquaculture (CEAC). Adult shrimp of the species Penaeus vannamei weighing 10 g, from the Laboratory of Aquatic Organism Nutrition - LANOA, were required.

The experimental design was completely randomized, being arranged in four experimental groups and a control group.

  • Treatment A: control (no supplementation)

  • Treatment B: a bacterial strain

  • Treatment C: a bacterial mix

  • Treatment D: a bacterial strain bioencapsulated in sodium alginate

  • Treatment E: a bacterial mix bioencapsulated in sodium alginate

In the control group, commercial feed was prepared with 35% crude protein and 2% soybean oil was added. For the other treatment groups, the introduction of the probiotic bacterial strains/mix was done by sprinkling the material diluted in saline solution on the commercial feed with 35% crude protein. The diets were placed in an oven at 50°C until complete drying, adding 2% soybean oil and then stored in closed containers and stored at room temperature.

Experimental protocol

The animals were stored individually in 4.5 L tanks, composing a biorehears system, with a daily water change of 50% of the volume to clean feed remains, feces and seedlings. The diet was offered ad libitum to the shrimp three times a day (8:00 am, 11:00 am and 2:00 pm) for 30 days. The animals were weighed and measured every 10 days. At the end of the cultivation cycle, an inoculum of the pathogen Vibrio harveyi in 1% NaCl was added to the cultivation water at a concentration of 108 CFU/mL. Shrimp were monitored for 24 h for morbidity and mortality. Quantitative analyzes of Total Cultivable Heterotrophic Bacteria (TCHB), Vibrio and sporogenic Bacillus in the intestine and intestinal contents of shrimp were performed on shrimp before and after exposure to the pathogen.

Quantification of bacteria

The animals were stunned by immersion in ice water, dissected and the intestines removed. The intestinal contents were separated from the tissues by scraping. The intestine tissue was externally washed with 70% alcohol and immersed in sterilized distilled water to eliminate alcohol residues and then macerated. Samples were serially diluted in 1% NaCl.

For the quantification of TCHB, aliquots of the dilutions were plated on the surface of the Nutrient Agar culture medium (1% NaCl) by spreading. Afterwards, the plates were incubated in an oven at 35°C for 48 h. and TCHB CFU counted. After counting, the plates were rinsed with sterile 1% (w/v) NaCl, the colonies disaggregated from the culture medium with the aid of a Drigalsky loop and the material collected in test tubes. They were incubated at 70°C for one hour. After this period, serial dilutions were made in 1% (w/v) NaCl saline solution and aliquots inoculated in 1.5% (w/v) NaCl Nutrient Agar medium using the pour plate technique, and the plates were incubated in an oven at 35°C for 48 h.

The count of bacteria of the genus Vibrio was performed by inoculating sample aliquots on the surface of the selective medium Agar Thiosulfate-citrate-bile-sucrose (TCBS), using the Spread Plate technique. The inoculated plates were incubated in an oven at 35°C for 24 h. All analyzes were performed in duplicate and counts were performed using a counter (model PHOENIX EC550A).

Statistical analysis

The results were statistically evaluated using analysis of variance (ANOVA) for completely randomized experiments. When there was a statistically significant difference (p<0.05) between treatments, their means were compared two by two, using Tukey’s test. The significance level adopted was 5%. For the statistical analysis, the following software was used: BioEstat 5.0® and Excel 2010 (Microsoft).

RESULTS AND DISCUSSION

The eighteen (18) strains isolated from the digestive tracts (DT) of native crustaceans are: eight (8) from crabs, six (6) from shrimps and four (4) from soft crabs. All isolates were confirmed as belonging to the genus Bacillus, of which eight (8) Bacillus spp.; four (4) B. cereus; two (2) B. thuringiensis; one (1) Bacillus subtilis; one (1) B. megaterium; one (1) B. circulans and one (1) B. agaridevorans (Table I). For a probiotic consumed in aquaculture to be efficient, it is necessary that the microorganism in question comes from the animal in question (Balcazar et al. 2006BALCAZAR JL, DE BLAS I, RUIZ-ZARZUELA I, CUNNINGHAM D, VENDRELL D & MUZQUIZ JL. 2006. The role of probiotcs in aquaculture. Vet Microbiol 114: 173-186.), as in this research, in which the strains used as probiotics for shrimp farming were isolated from marine crustaceans.

Table I
Molecular identification of Bacillus spp. isolated from soft crab, crab and shrimp samples.

Bacillus bacteria are identified in an abundance of environments, with environmental, clinical, and industrial significance. The strains found in this study are easily detected in the digestive tract of crustaceans, this happens due to the ingestion of food containing this microorganism. There are several studies of bacterial species of the genus Bacillus being isolated from fish and crustaceans (Gatesoupe 1999GATESOUPE FJ. 1999. The use of probiotics in aquaculture. Aquaculture 180: 147-165., Wang et al. 2022WANG J, WU Z, WANG S, WANG X, ZHANG D, WANG Q, LIN L, WANG G, GUO Z & CHEN Y. 2022. Inhibitory effect of probiotic Bacillus spp. isolated from the digestive tract of Rhynchocypris Lagowskii on the adhesion of common pathogenic bacteria in the intestinal model. Microb Pathogen 169: 105623., Kim et al. 2020KIM YO, MAHBOOB S, VIAYARAGHAVAN P, BIJI D, AL-GHANIM KA, AL-MISNED F, AHMED Z, KWON J, NA SW & KIM H. 2020. Growth promoting activity of Penaeus indicus by secondary metabolite producing probiotic bacterium Bacillus subtilis isolated from the shrimp gut. J King Saud Univ Sci 32: 1641-1646.). This genus is widely used as a probiotic in aquaculture, as it improves growth, immune response and is stronger against diseases (Kuebutornye et al. 2019KUEBUTORNYE FK, ABARIKE E & LU Y. 2019. A review on the application of Bacillus as probiotics in aquaculture. Fish Shellfish Immunol 87: 820-828., Ji et al. 2022JI T, CAO Y, CAO Q, ZHANG Y & YA H. 2022. The antagonistic effect and protective efficacy of gram-positive probiotics Bacillus coagulans to newly identified pathogens Pseudomonas aeruginosa in crucian carp Carassius auratus gibelio. Aquacult Rep 24: 101126.). A species widely used as a probiotic in aquaculture is Bacillus subtilis, which was also identified in this research (Hai 2015HAI NV. 2015. The use of probiotics in aquaculture. J Appl Bacteriol 119(4): 917-935., He et al. 2023HE X, ABAKARI G, TAN H, LIU W & LUO G. 2023. Effects of different probiotics (Bacillus subtilis) addition strategies on a culture of Litopenaeus vannamei in biofloc technology (BFT) aquaculture system. Aquaculture 566: 739216.).

The species Penaeus vannamei is cultivated in a tropical climate (Kir et al. 2023KIR M, SUNAR MC, TOPUZ M & SARIIPEK M. 2023. Thermal acclimation capacity and standard metabolism of the Pacific white shrimp Litopenaeus vannamei (Boone, 1931) at different temperature and salinity combinations. J Therm Biol 112: 103429.), the temperature is high throughout the year, with occasional changes. Feed production can occur at high temperatures, if the probiotic bacteria are insert at this time, it must be able to survive the process. The result of the temperature analysis (Table I) reveals that most of the strains showed to be tolerant to the variation of this parameter. At the temperature of 35°C and 40°C, there was growth in all strains, after these values the bacterial growth began to be impaired. At 45°C one strain did not grow and at 50°C four strains did not grow.

Another parameter that deserves attention is the pH, in shrimp cultures it is common to oscillate the pH in the water, this change can happen for several reasons, from the excretion of the cultivated organisms to the variety of microalgae in the nurseries (Huang et al. 2022HUANG C, LUO Y, ZENG G, ZHANG P, PENG R, JIANG X & JIANG M. 2022. Effect of adding microalgae to whiteleg shrimp culture on water quality, shrimp development and yield. Aquacult Rep 22: 100916.). It is important to mention that for a bacterium to be considered probiotic, it must be able to adapt to different circumstances (Wang et al. 2019WANG A, RAN C, WANG Y, ZHANG Z, DING Q, YANG Y, OLSEN RE, RING E, BINDELLE J & ZHOU Z. 2019. Use of probiotics in aquaculture of China-a review of the past decade. Fish Shellfish Immunol 86: 734-755.), including pH changes that occur during digestion. At pH 3 only one strain grew, at pH 5 growth was obtained in 16 strains, at pH 7 there was growth in 17 strains, while at pH 9 growth decreased to 13 strains. With these results, it can be concluded that some of these strains tolerate a pH variation favorable to probiotic formulation (Fernandes et al. 2019FERNANDES S, KERKAR S, LEITAO J & MISHRA A. 2019. Probiotic role of salt Pan bacteria in enhancing the growth of whiteleg shrimp, Litopenaeus vannamei. Probiotic Antimicrob. Proteins 11: 1309-1323.).

Other indispensable element for shrimp farming is salinity, as the shrimp Penaeus vannamei is naturally marine, and because of its osmoregulatory capacity tolerates salinity differences, the ideal is the bacteria probiotic have this characteristic. In commercial cultives, variations in salinity may occur, this will depend on the region in which the cultivation is being grown, the time of year, rainfall and evaporation rate. The development of Bacillus species in concentrations of 0%, 3%, 5% and 10% of NaCl was investigated. At 0%, 3% and 5% NaCl levels all tested strains achieved growth. The concentration of 10% NaCl was unhealthy to the growth of probiotic bacteria. Because of this result, it can be observed that these bacteria support large variations in salinity, a desired characteristic for production of probiotics for marine shrimp (Fernandes et al. 2019FERNANDES S, KERKAR S, LEITAO J & MISHRA A. 2019. Probiotic role of salt Pan bacteria in enhancing the growth of whiteleg shrimp, Litopenaeus vannamei. Probiotic Antimicrob. Proteins 11: 1309-1323.).

The results of antagonism against V. harveyi, aggregation test, antimicrobial susceptibility profile and enzyme profile are mentioned in Table II. For a probiotic strain to be considered safe, it is necessary to know the genus and species, perform in vitro tests, such as antimicrobial activity against pathogenic bacteria, adhesion capacity and in vivo studies that evaluate the action of probiotics (Chaudhari et al. 2022CHAUDHARI K, MOHAN M, SAUDAGAR P, SABLE C, SHINDES & BEDADE D. 2022. In vitro and in vivo evaluation of probiotic potential and safety assessment of Bacillus coagulans SKB LAB-19 (MCC 0554) in humans and animal healthcare. Regul Toxicol Pharm 133: 105218.). Among the tests carried out in vitro are the pathogen inhibition tests, also known as the antagonism test and the aggregation test.

Table II
Intrinsic characteristics of probiotic candidate bacterial isolates.

The inhibition factor of bacteria of the genus Bacillus was tested against Vibrio harveyi, which is a common pathogen found in shrimp farming. For the test of antagonism performed through the agar plug technique, the following results were found: ten strains of Bacillus sp. showed the ability to prevent the growth of the pathogen through the appearance of inhibition halos, against eight strains that do not have this ability.

Studies carried in vitro, through inhibition halos, report the ability of the genus Bacillus to inhibit pathogenic species of the genus Vibrio. Girija et al. 2018GIRIJA V, MALAIKOZHUNDAN B, VASEEHARAN B, VIJAYAKUMAR S, GOBIA N, HERRERA MD V, CHENC J & SANTHANAM P. 2018. In vitro antagonistic activity and the protective effect of probiotic Bacillus licheniformis Dahb1 in zebrafish challenged with GFP tagged Vibrio parahaemolyticus Dahv2. Microb Pathogen 114: 274-260., demonstrated that Bacillus licheniformisis able to inhibit the growth of V. parahaemolyticus. Another research carried out with B. safensis, proved strong antagonistic activity of the probiotic bacteria against V. parahaemolyticus, V. harveyi, V. vulnificus and V. alginolyticus, with good adaptation to different environmental conditions and safety for potential use (Huynh-Phuoc et al. 2022HUYNH-PHUOC V, LY TQ, PURBIANTORO W, NGO HVT, AFONSO F, VU NU & CHENG T. 2022. Bacillus safensis isolated from white-leg shrimp, Penaeus vannamei in Taiwan with antagonistic activity against common Vibrio pathogens. Biocatal Agric Biotechnol 44: 102477.).

In vitro antagonism against specific pathogens is an important tool for selecting probiotic candidates for use in aquaculture, the antimicrobial compounds of probiotic bacteria are responsible for this antagonistic action (Wang et al. 2019WANG A, RAN C, WANG Y, ZHANG Z, DING Q, YANG Y, OLSEN RE, RING E, BINDELLE J & ZHOU Z. 2019. Use of probiotics in aquaculture of China-a review of the past decade. Fish Shellfish Immunol 86: 734-755.).

Biofilm verification, through the glass aggregation test, of bacteria of the genus Bacillus demonstrates their ability to adhere to the intestine of crustaceans. This feature is very useful, it also indicates the ability of microorganisms to survive in different types of environments (Chaudhari et al. 2022CHAUDHARI K, MOHAN M, SAUDAGAR P, SABLE C, SHINDES & BEDADE D. 2022. In vitro and in vivo evaluation of probiotic potential and safety assessment of Bacillus coagulans SKB LAB-19 (MCC 0554) in humans and animal healthcare. Regul Toxicol Pharm 133: 105218.). Of the eighteen strains tested, seven were positive for the aggregation test, demonstrating possible colonization of the intestinal tract of crustaceans and their potential as probiotics.

The determination of antimicrobial susceptibility profiles of the Bacillus strains that were tested revealed that for the antimicrobials: erythromycin, ampicillin and oxytetracycline, 100% of the strains were sensitive. Using chloramphenicol, 94.44% of the strains were sensitive and 5.56% of the strains had an intermediate result. The results for the antimicrobial sulfazotrim were the most diverse: 38.89% resistant, 33.34% sensitive and 27.77% intermediate.

In a study carried out with 114 strains of Bacillus, resistance to antimicrobials was found: penicillin (98), ampicillin (91), sulfazotrim (10), clindamycin (8), erythromycin (2) and tetracycline (1) (Zhai et al. 2022ZHAI Z, CUI C, LI X, YAN J, SUN E, WANG C, GUO H & HAO Y. 2022. Prevalence, antimicrobial susceptibility, and antibiotic resistance gene transfer of Bacillus strains isolated from pasteurized milk. J Dairy Sci 106: 75-83.). Because due to the accelerated bacterial growth, the acquisition of random genetic mutations is favored, which results in resistance to an antimicrobial and a competitive advantage. By testing antimicrobial susceptibility profiles, it is possible to screen and identify antibiotic-resistant strains so that this resistance gene is not transmitted and this resistance to pathogens does not spread. Environments that facilitate the spread of resistant bacteria also allow the dissemination of opportunistic pathogens (Bengtsson-Palme et al. 2017BENGTSSON-PALME J, KRISTIANSSON E & LARSSON DGJ. 2017. Environmental factors influencing the development and spread of antibiotic resistance. FEMS Microbiology Reviews 42: 68-80.).

The results of the discovery of potential virulence factors among Bacillus strains isolated from the digestive tract of crustaceans, prove that in terms of occurrence, 100% of Bacillus sp. analyzed have caseinase and β-hemolysis enzyme activity, followed by 94.44% for phospholipase, 22.23% for gelatinase, 5.56% for elastase and none of the strains in the study in question have lipase enzyme activity. The number of strains that have exoenzyme activity is worrying, as these are indications of potential pathogenicity and a possible increase in the chances of infection by the microorganism (Silva et al. 2018SILVA IP, CARNEIRO C, SARAIVA MAF, OLIVEIRA TAS, SOUSA OV & EVANGELISTA-BARRETO NS. 2018. Antimicrobial resistance and potential virulence of Vibrio parahaemolyticus isolated from water and bivalve mollusks from Bahia, Brazil. Mar Pollut Bull 131: 757-762.).

In a study carried out using B. licheniformis and B. subtilis with probiotic activity against the pathogens Aeromonas hydrophila and A. veronii, it was possible to conclude that probiotic strains need to have good antibacterial activity and sensitivity to antibiotics, good tolerance to high temperatures, pH, gastric juices, intestinal juices and bile salts, ability to aggregate and adhere to the host’s intestine and inhibition against pathogenic bacteria, to be used in the prevention of diseases caused by aquatic pathogens (Wang et al. 2022WANG J, WU Z, WANG S, WANG X, ZHANG D, WANG Q, LIN L, WANG G, GUO Z & CHEN Y. 2022. Inhibitory effect of probiotic Bacillus spp. isolated from the digestive tract of Rhynchocypris Lagowskii on the adhesion of common pathogenic bacteria in the intestinal model. Microb Pathogen 169: 105623.). Results similar to those found in this study.

After carrying out the in vitro characterization tests, followed by in vivo testing. Cultivation started with animals weighing around 10 g (initial weights statistically equal between treatments). After 30 days of cultivation, the shrimp achieved weight gain growth as shown in Table III.

Table III
Initial weight, final weight and survival of shrimp fed with ration supplemented with probiotic.

Analyzing the results there was no statistically significant difference between treatments in terms of final weight. In treatment C, which used a bacterial sprinkling mix, there was no statistically significant difference between initial weight and final weight. The lowest survival rate was found in treatment E, which also used a microencapsulated bacterial mix. It is possible to conclude that the strains chosen for the bacterial consortium do not show efficiency for weight gain and survival when used together.

In treatment D, the highest survival and good zootechnical performance were found, these results suggest that microencapsulation is responsible for this benefit. Through the microencapsulation of probiotics, it is possible to protect the probiotic microorganisms during the stages of production, preservation and in the digestive tract, giving it the expected effectiveness (Vivek et al. 2023VIVEK K, MISHRA S, PRADHAN RC, NAGARAJAN M, KUMAR PK, SINGH SS, MANVI D & GOWDA NN. 2023. A comprehensive review on microencapsulation of probiotics: Technology, carriers and current trends. Appl Food Res 3: 100248.).

Just as this study proves the genus Bacillus with probiotic potential, other research confirms, as in this study of probiotic supplementation using the species B. coagulans, confirmed that the concentration of 1 x 108 CFU.g-1 can promote benefits for the health of the shrimp, improves the intestinal microbiota, immune response, and digestive enzyme activity (Amoah et al. 2019AMOAH K, HUANG QC, TAN BP, ZHANG S, CHI SY, YABG QH, LIU HY & DONG XH. 2019. Dietary supplementation of probiotic Bacillus coagulans ATCC 7050, improves the growth performance, intestinal morphology, microflora, immune response, and disease confrontation of Pacific white shrimp, Litopenaeus vannamei. Fish Shellfish Immunol 87: 796-808.). Shao et al. 2023SHAO Y, WANG C, LU T, JIANG J, LI C & WANG X. 2023. Dietary Bacillus cereus LS2 protects juvenile sea cucumber Apostichopus japonicus against Vibrio splendidus infection. Fish Shellfish Immunol 143: 109237. concluded that adding B. cereus LS2 strains to the diet can improve growth performance, improve innate immunity, optimize gut microbiota structure, and increase resistance to infection pathogens by A. japonicus.

In another study, in which strains of Bacillus subtilis were isolated from wild Penaeus indicus, it was observed that these probiotic bacteria could produce secondary metabolites with antibacterial activity against several pathogenic bacteria. And when Penaeus indicus was fed a probiotic diet, it increased the growth rate of the shrimp, explained by the fact that the probiotic bacteria are involved in the synthesis of various enzymes and increase the digestibility of the shrimp feed (Kim et al. 2020KIM YO, MAHBOOB S, VIAYARAGHAVAN P, BIJI D, AL-GHANIM KA, AL-MISNED F, AHMED Z, KWON J, NA SW & KIM H. 2020. Growth promoting activity of Penaeus indicus by secondary metabolite producing probiotic bacterium Bacillus subtilis isolated from the shrimp gut. J King Saud Univ Sci 32: 1641-1646.).

The genus in question can also benefit to fish against other pathogens, as in this study carried out with the fish Labeo rohita confirmed that the use of Bacillus amyloliquefaciens against the pathogen Aeromonas hydrophila, positively modulated immuno-biochemical responses and immune-related gene expression after 30 days of supplementation (Khan et al. 2022KHAN MIR, KAMILYA D, CHOUDHURY TG & RATHORE G. 2022. Dietary administration of a host-gut derived probiotic Bacillus amyloliquefaciens COFCAU_P1 modulates immune-biochemical response, immune-related gene expression, and resistance of Labeo rohita to Aeromonas hydrophila infection. Aquaculture 546: 737390.). Another study, indicates that immersing shrimp with 3.4 × 106 CFU/mL of B. velezensis for 15 days can increase its resistance to A. salmonicida, causing a protective effect against infection.

In Figure 1, data on Standard Plate Counts of Vibrio and Bacillus in the intestine and intestinal contents, respectively, of shrimp after being fed for thirty days with a diet supplemented with Bacillus sp., probiotic bacteria. The count was performed before and after an infection in the culture system with the shrimp pathogen Vibrio harveyi.

Figure 1
Prevalence, antimicrobial susceptibility, and antibiotic resistance gene transfer of Bacillus strains isolated from pasteurized milk Standard Plate Counts of Vibrio and Bacillus in the intestine and intestinal contents.

The concentration of bacteria of the genus Bacillus before infection was higher than the concentration of bacteria of the genus Vibrio, this calculation was expected, since the treatments (except the control) received supplementation of Bacillus sp., probiotic bacteria in the feed. Test treatments demonstrate Bacillus sp. superior to the control, in which there was no supplementation with the probiotic bacteria. In treatment C, the highest count of Bacillus sp. and the lowest Vibrio count.

Before infection, the highest number of Vibrio was found in treatment E. Treatments C and E received the same strains, however, administered differently. Probably, this way of administering the strains in the feed contributed to the result. The period of action of the treatments that used aspersion was faster than the treatments that used sodium alginate, this was concluded by comparing treatments B and C with treatments D and E, the bacteria of the genus Vibrio developed faster than Bacillus sp.

After the infection, the Vibrio count increased in the treatments, because to the inoculation of Vibrio harveyi. On the other hand, there was also a significant increase in Bacillus sp. adhered to the intestine, in all treatments, with emphasis on treatment B.

The main function of the gastrointestinal system is to digest food, but it is responsible for other important functions, such as creating a protective barrier by constructing physical, chemical, microbial, and immune activities to guard the pathophysiological homeostasis of the body (Chelakkot et al. 2018CHELAKKOT C, GHIM J & RYU SH. 2018. Mechanisms regulating intestinal barrier integrity and its pathological implications. Exp Mol Med 50: 1-9.). Therefore, intestinal health is linked to the balance of the intestinal microbiota.

Probiotic and pathogenic bacteria compete for nutrients and adhesion sites on the intestine of cultured organisms, but probiotics can prevent the attachment and survival of pathogens (Acunha et al. 2023ACUNHA RM, SANCHES DS, ALMEIDA RGS, OLIVEIRA FC, SOARES MP, DAVALO MRS, SILVA MEVM, OLIVEIRA KKC & CAMPOS CM. 2023. The use of immunomodulators in fish feed: A review. Res Soc Dev 12(4): 11312440964.). Adhesion of probiotics to the intestine produces defensive substances against pathogens (Araujo et al. 2017ARAUJO EL, BARBAS LAL, ISHIKAWA CM, DIAS DC, SUSSER FR, MARQUES HLA & TACHIBA L. 2017. Prebiotic, probiotic, and synbiotic in the diet of Nile tilapia post-larvae during the sex reversal phase. Aquacult Int 26(1): 85-97.). In this study, the antagonistic activity of probiotic strains against Gram-negative bacteria can be verified. This inhibition occurs mainly through the production of compounds by probiotic bacteria capable of inhibiting the growth of Gram-negative bacteria.

Probiotics can be used preventively to reduce the impacts caused by vibriosis, as they act to improve growth, antioxidant status, immunity and disease resistance in fish and shrimp. These products will modulate shrimp immunity to increase resistance to pathogens (Abdel-Latif et al. 2022ABDEL-LATIF HMR, YILMAZ E, DAWOOD MAO, RING E, AGMADIAR E & YILMAZ S. 2022. Shrimp vibriosis and possible control measures using probiotics, postbiotics, prebiotics, and synbiotics: A review. Aquaculture 551: 737951.). The probiotic efficacy of B. subtilis can be improved through encapsulation in alginate and coating with chitosan, in relation to the non-encapsulated probiotic or only encapsulated with alginate. Maintaining the probiotic viability of microorganisms under conditions like the digestive tract. Furthermore, it increases the shelf life of the probiotic relative to non-encapsulated probiotic (Adilah et al. 2022ADILAH RN, CHIU ST, HU SY, BALLANTYNE R, HAPPY N, CHENG AC & LIU CH. 2022. Improvement in the probiotic efficacy of Bacillus subtilis E20-stimulates growth and health status of white shrimp, Litopenaeus vannamei via encapsulation in alginate and coated with chitosan. Fish Shellfish Immunol 125: 74-83.).

Excessive and incorrect use of antibiotics can generate bacteria resistant to these chemical compounds, in addition to causing an imbalance in the natural microbiota of the water and intestine of farmed animals, which can increase the likelihood of the host being infected in the future (Banerjee et al. 2017BANERJEE G, NANDI A & RAY AK. 2017. Assessment of hemolytic activity, enzyme production and bacteriocin characterization of Bacillus subtilis LR1 isolated from the gastrointestinal tract of fish. Arch Microbiol 199(1): 115-124.).

Although probiotics are used as an alternative to the use of antibiotics, care must be taken with the production of antibiotic substances due to the risk of transferring antibiotic resistance. For safety, probiotic candidates should be screened for evaluation in aquatic animal models (Wang et al. 2019WANG A, RAN C, WANG Y, ZHANG Z, DING Q, YANG Y, OLSEN RE, RING E, BINDELLE J & ZHOU Z. 2019. Use of probiotics in aquaculture of China-a review of the past decade. Fish Shellfish Immunol 86: 734-755.). With the outcome found in this study, it can be suggested that complementary research be carried out on the probiotic potential of Bacillus sp. used in this experiment to control Vibrio, reducing the effects of this pathogen in shrimp farming.

CONCLUSION

It can be concluded that the strains found in this research have probiotic activity, according to the in vitro results of temperature, pH, salinity, antagonistic activity and aggregation test. In the in vivo test, treatments that used microorganisms of the Bacillus genus, there was a reduction in the growth of pathogenic bacteria after infection with V. harveyi, in the intestinal contents and intestine. And finally, treatments that used probiotic bacteria of the genus Bacillus bioencapsulated in sodium alginate, achieved less adhesion of pathogenic bacteria of the genus Vibrio in the intestine, with satisfactory zootechnical performance.

ACKNOWLEDGMENTS

This work was carried out with the support of the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES).

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Publication Dates

  • Publication in this collection
    23 Sept 2024
  • Date of issue
    2024

History

  • Received
    08 Feb 2024
  • Accepted
    28 June 2024
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