Flavivirus |
NS5 (+) |
TCAAGGAACTCCACACATGAGATGTACT |
256 |
Fulop et al., 1993FULOP, L.; BARRETT, A.D.T.; PHILLPOTTS, R et al. Rapid identification of flaviviruses based on conserved NS5 gene sequences. J. Virol. Methods, v.44, p.179-188, 1993.
|
NS5 (−) |
GTGTCCCATCCTGCTGTGTCATCAGCATACA |
Alphavirus
|
M2W |
YAGAGCDTTTTCGCAYSTRGCHW |
434 |
Pfeffer et al., 1997PFEFFER, M.; PROEBSTER, B.; KINNEY, R.M.; KAADEN, O.R. Genus-specific detection of alphaviruses by a semi-nested reverse transcription-polymerase chain reaction. Am. J. Trop. Med.Hyg., v.57, p.709-718, 1997.
|
cM3W |
ACATRAANKGNGTNGTRTCRAANCCDAYCC |
Influenza A |
M52C |
CTTCTAACCGAGGTCGAAACG |
244 |
Fouchier et al,. 2000FOUCHIER, R.A.M.; BESTEBROER, T.M.; HERFST, S et al. Detection of Influenza A viruses from different species by PCR amplification of conserved sequences in the matrix gene. J. Clin. Microbiol., v.38, p.4096-4101, 2000.
|
M253R |
AGGGCATTTTGGACAAAGTCGTCTA |
Paramyxovirus
|
PAR-F1 |
GAAGGITATTGTCAIAARNTNTGGAC |
200 a 500 |
Tong et al., 2008TONG, S.; CHERN, S.W.W.; LI, Y et al. Sensitive and broadly reactive reverse transcription-PCR assays to detect novel paramyxoviruses. J. Clin. Microbiol., v.46, p.2652-2658, 2008.
|
PAR-F2 |
GTTGCTTCAATGGTTCARGGNGAYAA |
PAR-R |
GCTGAAGTTACIGGITCICCDATRTTNC |
Newcastle disease vírus |
NDVF |
CCTTGGTGAITCTATCCGIAG |
254 |
Seal et al., 1995SEAL, B.S.; KING, D.J.; BENNETT, J.D. Characterization of newcastle disease virus isolates by reverse transcription PCR coupled to direct nucleotide sequencing and development of sequence database for pathotype prediction and molecular epidemiological analysis. J. Clin. Microbiol., v.33, p.2624-2630, 1995.
|
NDVR |
CTGCCACTGCTAGTTGIGATAATCC |
Avian Bornavirus
|
ABV_MF |
GGRCAAGGTAATYGTYCCTGGATGGCC |
360 |
Kistler et al., 2008KISTLER, A.L.; GANCZ, A.; CLUBB, S et al. Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. Virol. J., v.5, p.88, 2008.
|
ABV_PR |
CCAACACCAATGTTCCGAAGMCG |
Pan- herpesvirus |
DFA |
GAYTTYGCNAGYYTNTAYCC |
210 a 315 |
Vandevanter et al., 1996VANDEVANTER, D.R.; WARRENER, P.; BENNETT, L et al. Detection and analysis of diverse herpesviral species by consensus primer PCR. J. Clin. Microbiol., v.34, p.1666-1671, 1996.
|
ILK |
TCCTGGACAAGCAGCARNYSGCNMTNAA |
KG1 |
GTCTTGCTCACCAGNTCNACNCCYTT |
TGV |
TGTAACTCGGTGTAYGGNTTYACNGGNGT |
IYG |
CACAGAGTCCGTRTCNCCRTADAT |
Marek’s disease vírus |
MR-S |
TGTTCGGGATCCTCGGTAAGA |
583 a 763 |
Chang et al., 2002CHANG, KYUNG-SOO; LEE, SUNG, I.I.; OHASHI, K. et al. The detection of the meq gene in chicken infected with Marek's Disease virus Serotype 1. J. Vet. Med. Sci., v.64, p.413-417, 2002.
|
MR-AS |
AGTTGGCTTGTCATGAGCCAG |
PsHV-1 |
PsHV UL16/17F |
TGCGTGGGGTTAAACTCGGAAC |
667 |
Tomaszewski et al., 2006TOMASZEWSKI, E.K.; WIGLE W.; PHALEN D.N. Tissue distribution of Psittacid Herpesviruses in latently infected parrots, repeated sampling of latently infected parrots and prevalence of latency in parrots submitted for necropsy. J. Vet. Diag. Invest., v.18, p.536-544, 2006.
|
PsHV UL16/17R |
CGACTACACGAGCCTAACATC |
PsHV UL16/17 Internal |
CGACTTCTCAACGACGTC |
418 |
Aviadenovirus
|
Hexon AF |
CAARTTCAGRCAGACGGT |
897 |
Meulemans et al., 2001MEULEMANS, G.; BOSCHMANS, M.; VAN DEN BERG, T.P.; DECAESSTECKER, M. Polymerase chain reaction combined with restriction enzyme analysis for detection and differentiation of fowl adenoviruses. Avian Pathol., v.30, p.655-660, 2001.
|
Hexon BR |
TAGTGATGMCGSGACATCAT |
Apicomplexa |
RIB-19 |
CGGGATCCAACCTGGTTGATCCTGC |
1700 |
Zahler et al., 2000ZAHLER, M.; RINDER, H.; SCHEIN, E.; GOTHE, R. Detection of a new pathogenic Babesia microti-like species in dogs. Vet. Parasitol., v.89, p.241-248, 2000.
|
RIB-20 |
CCGAATTCCTTGTTACGACTTCTC |
BabRumF |
ACCTCACCAGGTCCAGACAG |
420 |
Silveira et al., 2011SILVEIRA, J.A.G.; RABELO, É.M.L.; RIBEIRO, M.F.B. Detection of Theileria and Babesia in brown brocket deer (Mazama gouazoubira) and marsh deer (Blastocerus dichotomus) in the State of Minas Gerais, Brazil. Vet. Parasitol., v.177, p.61-66, 2011.
|
BabRumR |
GTACAAAGGGCAGGGACGTA |
Toxoplasma gondii
|
TOX 4 |
CGCTGCAGGGAGGAAGACGAAAGTTG |
529 |
Homan et al., 2000HOMAN, W.L.; VERCAMMEN, M.; BRAEKELEER, J.; VERSCHUEREN, H. Identification of a 200- to 300-fold repetitive 529 bp DNA fragment in Toxoplasma gondii, and its use for diagnostic and quantitative PCR. Int. J. Parasitol., v.30, p.69-75, 2000.
|
TOX 5 |
CGCTGCAGACACAGTGCATCTGGATT |