E. coli O157
|
rfbEO157
|
F: CTACAGGTGAAGGTGGAATGG R: ATTCCTCTCTTTCCTCTGCGG |
327 |
94oC, 5 min; 24 ciclos de 94oC por 30s, 60 oC por 30s, 72oC por 30s; extensão final de 72oC, 5min |
10 |
WANG et al., 2002WANG, G.; CLARK, C.G.; RODGERS, F.G. Detection in Escherichia coli of the genes encoding the major virulence factors, the genes defining the O157:H7 serotype, and components of the type 2 shiga toxin family by multiplex PCR. Journal of Clinical Microbiology, Washington, v.40, n.10, p.3613-3619, 2002.
|
E. coli H7
|
fliC
H7
|
F: GCGCTGTCGAGTTCTATCGAGC R: AACGGTGACTTTATCGCCATTCC |
625 |
94oC, 5 min; 24 ciclos de 94oC por 30s, 60 oC por 30s, 72oC por 30s; extensão final de 72oC, 5min |
10 |
GANNON et al., 1997GANNON, V.P.G.; D´SOUZA, S.; GRAHAM, T.; KING, R.K. ; RAHN, K. READ, S. Use of the flagellar H7 gene as a target in multiplex PCR assays and improved specificity in identification of enterohaemorrhagic Escherichia coli strains. Journal of Clinical Microbiology, Washington, v.35, n.3, p.656-662, 1997.
|
E. coli O26
|
wzx-wzy O26 |
F: AAATTAGAAGCGCGTTCATC R: CCCAGCAAGCCAATTATGACT |
596 |
94oC, 5 min; 24 ciclos de 94oC por 30s, 55 oC por 30s, 72oC por 30s; extensão final de 72 oC, 5min |
10 |
DURSO et al., 2005DURSO, L.M.; BONO, J.L.; KEEN, J.E. Molecular serotyping of Escherichia coli O26:H11. Applied and Environmental Microbiology, Washington, v.71, n.8, p.4941-4944, 2005.
|
E. coli O55
|
wbgN O55 |
F: TGTAATTCGATGCACCAATTCAG R: CGCTTCGACGTTCGATACATAA |
70 |
94oC, 5 min; 24 ciclos de 94oC por 30s, 55 oC por 30s, 72oC por 30s; extensão final de 72oC, 5min |
10 |
PERELLE et al., 2004PERELLE, S.; DILASSER, F.; GROUT, J.; FACH, P. Detection by 5'-nuclease PCR of shiga-toxin producing Escherichia coli O26, O55, O91, O103, O111, O113, O145 and O157:H7, associated with the world's most frequent clinical cases. Molecular and Cellular Probes, v.18, p.185-192, 2004.
|
E. coli O91
|
wzy O91 |
F: CGATTTTCTGGAATGCTTGATG R: CAATACATAGTTTGATTTGTGTTTAAAGTTTAAT |
105 |
94oC, 5 min; 24 ciclos de 94oC por 30s, 55 oC por 30s, 72 oC por 30s; extensão final de 72 oC, 5min |
10 |
PERELLE et al., 2004PERELLE, S.; DILASSER, F.; GROUT, J.; FACH, P. Detection by 5'-nuclease PCR of shiga-toxin producing Escherichia coli O26, O55, O91, O103, O111, O113, O145 and O157:H7, associated with the world's most frequent clinical cases. Molecular and Cellular Probes, v.18, p.185-192, 2004.
|
E. coli O103
|
wzx O103 |
F: TTGGAGCGTTAACTGGACCT R: GCTCCCGAGCACGTATAAG |
321-280 |
94oC, 5 min; 24 ciclos de 94oC por 30s, 55 oC por 30s, 72oC por 30s; extensão final de 72oC, 5min |
10 |
FRATAMICO et al., 2005FRATAMICO, P.M.; DEBROY, C.; STROBAUGH JR., T.P.; CHEN, C. DNA sequence of the Escherichia coli O103 O antigen gene cluster and detection of enterohemorrhagic E. coli O103 by PCR amplification of the wzx and wzy genes. Canadian Journal of Microbiology, Ottawa, v.51, n.6, p.515-522, 2005.
|
E. coli O111
|
O111 |
F: TAGAGAAATTATCAAGTTAGTTCC R: ATAGTTATGAACATCTTGTTTAGC |
406 |
94oC, 5 min; 24 ciclos de 94oC por 30s, 60 oC por 30s, 72oC por 30s; extensão final de 72oC, 5min |
10 |
PATON & PATON, 1998PATON, A.W.; PATON, J.C. Detection and characterization of shiga toxigenic Escherichia coli by using multiplex PCR assays for stx1, stx2, eaeA, Enterohemorragic E. coli hlyA, rfb o111 and rfbo157. Journal of Clinical Microbiology, Washington, v.36, n.2, p.598-602, 1998.
|
E. coli O113
|
O113 |
F: AGCGTTTCTGACATATGGAGTG R: GTGTTAGTATCAAAAGAGGCTCC |
593 |
94oC, 5min; 24 ciclos de 94oC por 30s, 60oC por 30s, 7 oC por 30s; extensão final de 72oC, 5min |
10 |
PATON et al., 1999PATON, A.W.; WOODROW, M.C.; DOYLE, R.; LANSER, J.A.; PATON, J.C. Molecular characterization of a shiga toxigenic Escherichia coli O113:H21 strain lacking eae responsible for a cluster of cases of hemolytic-uremic syndrome. Journal of Clinical Microbilogy, Washington, v.37, n.10, p.3357-3361, 1999.
|
E. coli O121
|
wzx O121 |
F: GTAGCGAAAGGTTAGACTGG R: ATGGGAAAGCTGATACTGC |
651 |
94oC, 5min; 24 ciclos de 94oC por 30s, 60 oC por 30s, 72oC por 30s; extensão final de 72oC, 5min |
10 |
MONDAY et al., 2007MONDAY, S.R.; BEISAW, A.; FENG, P.C.H. Identification of Shiga toxigenic Escherichia coli seropathotypes A and B by multiplex PCR. Molecular and Cellular Probes, London, v.21, n.4, p.308-311, 2007.
|
E. coli O145
|
wzx1 O145 |
F: ACTGGGATTGGACGTGGATA R: AGGCAAGCTTTGGAAATGAA |
222 |
94oC, 5min; 24 ciclos de 94oC por 30s, 55oC por 30s, 72oC por 30s; extensão final de 72oC, 5min |
10 |
FRATAMICO et al., 2009FRATAMICO, P.M.; DEBROY, C.; MIYAMOTO, T.; LIU, Y. PCR Detection of Enterohemorrhagic Escherichia coli O145 in Food by Targeting Genes in the E. coli O145 O-Antigen Gene Cluster and the Shiga Toxin 1 and Shiga Toxin 2 Genes. Foodborne Pathogens and Disease, New Rochelle, v.6, n.5, p.605-611, 2009.
|