Original ID |
Other ID |
|
|
|
|
|
C1 |
P149 |
Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C2 |
P159 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C3 |
P163 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C4 |
ATCC 60855 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phenotypic |
(Bustamante-Simon et al., 1985Bustamante-Simon B, McEwen JG, Tabares AM, Arango M and Restrepo-Moreno A (1985) Characteristics of the conidia produced by the mycelial form of Paracoccidioides brasiliensis Sabouraudia 23:407-414.) |
|
|
|
|
|
Phenotypic |
(Villar et al., 1988Villar LA, Salazar ME and Restrepo A (1988) Morphological study of a variant of Paracoccidioides brasiliensis that exists in the yeast form at room temperature. J Med Vet Myco 26:269-276.) |
|
|
|
|
|
Virulence |
(Gomez et al., 2001Gomez BL, Nosanchuk JD, Diez S, Youngchim S, Aisen P, Cano LE, Restrepo A, Casadevall A and Hamilton AJ (2001) Detection of melanin-like pigments in the dimorphic fungal pathogen Paracoccidioides brasiliensisin vitro and during infection. Infect Immun 69:5760-5767.) |
|
|
|
|
|
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C5 |
P141 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C6 |
P196 / Higuita |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Molecular Identification |
(Corredor et al., 2005Corredor GG, Peralta LA, Castano JH, Zuluaga JS, Henao B, Arango M, Tabares AM, Matute DR, McEwen JG and Restrepo A (2005) The naked-tailed armadillo Cabassous centralis (Miller 1899): a new host to Paracoccidioides brasiliensis Molecular identification of the isolate. Med Mycol 43:275-280.) |
|
|
|
|
|
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C7 |
P204 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C8 |
P292 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C9 |
P68 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C10 |
P72 |
Cordoba, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C11 |
P46 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C12 |
P161 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C13
|
76533 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Susceptibility |
(Hoyos et al., 1984Hoyos GL, McEwen JG, Brummer E, Castaneda E, Restrepo A and Stevens DA (1984) Chronic murine paracoccidioidomycosis: effect of ketoconazole on clearance of Paracoccidioides brasiliensis and immune response. Sabouraudia 22:419-426.) |
|
|
|
|
|
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C14 |
H31 |
Boyaca, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C15 |
H45 |
Cundinamarca, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C16 |
H47 |
Arauca, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C17 |
P206 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C18 |
P151 |
Antioquia, Colombia |
Chronic /PCM |
MLST |
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C19 |
CIB44197 |
Caldas, Colombia |
Armadillo |
MLST |
Molecular Identification |
(Corredor et al., 2005Corredor GG, Peralta LA, Castano JH, Zuluaga JS, Henao B, Arango M, Tabares AM, Matute DR, McEwen JG and Restrepo A (2005) The naked-tailed armadillo Cabassous centralis (Miller 1899): a new host to Paracoccidioides brasiliensis Molecular identification of the isolate. Med Mycol 43:275-280.) |
|
|
|
|
|
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C20 |
Pb73/ ATCC 32071 |
Antioquia, Colombia |
Unknown |
MLST |
Serological tests |
(Restrepo-Moreno 1967Restrepo-Moreno A and Schneidau JD (1967) Nature of the skin-reactive principle in culture filtrates prepared from Paracoccidioides brasiliensis J Bacteriol 93:1741-1748.) |
|
|
|
|
|
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
C21 |
CIB40392 |
Caldas, Colombia |
Armadillo |
MLST |
Epidemiological |
(Corredor et al., 1999Corredor GG, Castano JH, Peralta LA, Diez S, Arango M, McEwen J and Restrepo A (1999) Isolation of Paracoccidioides brasiliensis from the nine-banded armadillo Dasypus novemcinctus in an endemic area for paracoccidioidomycosis in Colombia. Rev Iberoam Micol 16:216-220.) |
|
|
|
|
|
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
T2 |
EPM54 |
Caracas, Venezuela |
Soil |
MLST, PCR – RFLP |
Phylogenetic |
(Roberto et al., 2016Roberto TN, Rodrigues AM, Hahn RC and de Camargo ZP (2016) Identifying Paracoccidioides phylogenetic species by PCR-RFLP of the alpha-tubulin gene. Med Mycol 54:240-247.) |
5598 |
EPM62 |
Caracas, Venezuela |
Acute/PCM |
MLST, PCR – RFLP |
Phylogenetic |
(Roberto et al., 2016Roberto TN, Rodrigues AM, Hahn RC and de Camargo ZP (2016) Identifying Paracoccidioides phylogenetic species by PCR-RFLP of the alpha-tubulin gene. Med Mycol 54:240-247.) |
JDA – 80 |
EPM77 |
Medellin, Colombia |
Unknown |
MLST, PCR – RFLP |
Phylogenetic |
(Roberto et al., 2016Roberto TN, Rodrigues AM, Hahn RC and de Camargo ZP (2016) Identifying Paracoccidioides phylogenetic species by PCR-RFLP of the alpha-tubulin gene. Med Mycol 54:240-247.) |
MSCol |
EPM81 |
Medellin, Colombia |
Chronic /PCM |
MLST, PCR – RFLP |
Phylogenetic |
(Roberto et al., 2016Roberto TN, Rodrigues AM, Hahn RC and de Camargo ZP (2016) Identifying Paracoccidioides phylogenetic species by PCR-RFLP of the alpha-tubulin gene. Med Mycol 54:240-247.) |
I9 |
EPM83 |
Bogotá, Colombia |
Chronic /PCM |
MLST, PCR – RFLP |
Phylogenetic |
(Theodoro et al., 2008Roberto TN, Rodrigues AM, Hahn RC and de Camargo ZP (2016) Identifying Paracoccidioides phylogenetic species by PCR-RFLP of the alpha-tubulin gene. Med Mycol 54:240-247.) |
|
|
|
|
|
Serological |
(Machado et al., 2013Machado GC, Moris DV, Arantes TD, Silva LR, Theodoro RC, Mendes RP, Vicentini AP and Bagagli E (2013) Cryptic species of Paracoccidioides brasiliensis: impact on paracoccidioidomycosis immunodiagnosis. Mem Inst Oswaldo Cruz 108:637-643.) |
|
|
|
|
|
Proteome |
(Pigosso et al., 2013Pigosso LL, Parente AF, Coelho AS, Silva LP, Borges CL, Bailao AM and Soares CM (2013) Comparative proteomics in the genus Paracoccidioides Fungal Genet Biol 60:87-100.) |
|
|
|
|
|
Secretome |
(de Oliveira et al., 2018de Oliveira AR, Oliveira LN, Chaves EGA, Weber SS, Bailao AM, Parente-Rocha JA, Baeza LC, de Almeida Soares CM and Borges CL (2018) Characterization of extracellular proteins in members of the Paracoccidioides complex. Fungal Biol 122:738-751.) |
*B18 |
Pb339 or |
Brazil |
Unknown |
MLST, PCR - RFLP |
Serological tests |
(Restrepo-Moreno 1967Restrepo-Moreno A and Schneidau JD (1967) Nature of the skin-reactive principle in culture filtrates prepared from Paracoccidioides brasiliensis J Bacteriol 93:1741-1748.) |
|
ATCC 32069 |
|
|
|
Virulence |
(Gomez et al.
|
|
EPM01 or B339 |
|
|
|
Serological |
(Camargo et al., 2003Camargo ZP, Berzaghi R, Amaral CC and Silva SH (2003) Simplified method for producing Paracoccidioides brasiliensis exoantigens for use in immunodiffusion tests. Med Mycol 41:539-542.) |
|
or ATCC 200273 |
|
|
|
Phylogenetic |
(Matute et al., 2006Matute DR, McEwen JG, Puccia R, Montes BA, San-Blas G, Bagagli E, Rauscher JT, Restrepo A, Morais F, Nino-Vega G et al. (2006) Cryptic speciation and recombination in the fungus Paracoccidioides brasiliensis as revealed by gene genealogies. Mol Biol Evol 23:65-73.) |
|
|
|
|
|
Mitochondrial DNA |
(Salgado – Salazar et al., 2010Salgado-Salazar C, Jones LR, Restrepo A and McEwen JG (2010) The human fungal pathogen Paracoccidioides brasiliensis (Onygenales: Ajellomycetaceae) is a complex of two species: phylogenetic evidence from five mitochondrial markers. Cladistics 26:613-624.) |
|
|
|
|
|
Phylogenetic |
(Roberto et al., 2016Roberto TN, Rodrigues AM, Hahn RC and de Camargo ZP (2016) Identifying Paracoccidioides phylogenetic species by PCR-RFLP of the alpha-tubulin gene. Med Mycol 54:240-247.) |
|
|
|
|
|
Phylogenetic |
(Muñoz et al., 2016Muñoz JF, Farrer RA, Desjardins CA, Gallo JE, Sykes S, Sakthikumar S, Misas E, Whiston EA, Bagagli E, Soares CM et al. (2016) Genome diversity, recombination, and virulence across the major lineages of Paracoccidioides mSphere 1:e00213-00216.) |
PbBac |
- |
Colombia |
PCM |
Genomic sequencing |
Phylogenetic |
(Muñoz et al., 2016Muñoz JF, Farrer RA, Desjardins CA, Gallo JE, Sykes S, Sakthikumar S, Misas E, Whiston EA, Bagagli E, Soares CM et al. (2016) Genome diversity, recombination, and virulence across the major lineages of Paracoccidioides mSphere 1:e00213-00216.) |
PbCnh |
- |
Colombia |
Chronic /PCM |
Genomic sequencing |
Phylogenetic |
(Muñoz et al., 2016Muñoz JF, Farrer RA, Desjardins CA, Gallo JE, Sykes S, Sakthikumar S, Misas E, Whiston EA, Bagagli E, Soares CM et al. (2016) Genome diversity, recombination, and virulence across the major lineages of Paracoccidioides mSphere 1:e00213-00216.) |
PbJam |
- |
Colombia |
Chronic /PCM |
Genomic sequencing |
Phylogenetic |
(Muñoz et al., 2016Muñoz JF, Farrer RA, Desjardins CA, Gallo JE, Sykes S, Sakthikumar S, Misas E, Whiston EA, Bagagli E, Soares CM et al. (2016) Genome diversity, recombination, and virulence across the major lineages of Paracoccidioides mSphere 1:e00213-00216.) |
BAT |
Pb327 - B |
Ribeirão Preto – São Paulo, Brazil |
Subacute/PCM |
MLST, PCR – RFLP |
Serological |
(Silva – Vergara et al., 1998Silva-Vergara ML, Martinez R, Chadu A, Madeira M, Freitas-Silva G and Leite Maffei CM (1998) Isolation of a Paracoccidioides brasiliensis strain from the soil of a coffee plantation in Ibia, State of Minas Gerais, Brazil. Med Mycol 36:37-42.) |
|
|
|
|
|
Mycological |
(Lacaz Cda, S et al., 1999Lacaz CS, Vidal MS, Heins-Vaccari EM, de Melo NT, Del Negro GM, Arriagada GL and Freitas RS (1999) Paracoccidioides brasiliensis A mycologic and immunochemical study of two strains. Rev Inst Med Trop Sao Paulo 41:79-86.) |
|
|
|
|
|
Phylogenetic |
(Calcagno et al., 1998Calcagno AM, Nino-Vega G, San-Blas F and San-Blas G (1998) Geographic discrimination of Paracoccidioides brasiliensis strains by randomly amplified polymorphic DNA analysis. J Clin Microbiol 36:1733-1736.) |
|
|
|
|
|
Phylogenetic |
(Niño – Vega et al., 2000Nino-Vega GA, Calcagno AM, San-Blas G, San-Blas F, Gooday GW and Gow NA (2000) RFLP analysis reveals marked geographical isolation between strains of Paracoccidioides brasiliensis Med Mycol 38:437-441.) |
|
|
|
|
|
Serological |
(Panuto – Castelo et al., 2003Panunto-Castelo A, Freitas-da-Silva G, Bragheto IC, Martinez R and Roque-Barreira MC (2003) Paracoccidioides brasiliensis exoantigens: recognition by IgG from patients with different clinical forms of paracoccidioidomycosis. Microbes Infect 5:1205-1211.) |
|
|
|
|
|
Immunologic |
(Coltri et al., 2006Coltri KC, Casabona-Fortunato AS, Gennari-Cardoso ML, Pinzan CF, Ruas LP, Mariano VS, Martinez R, Rosa JC, Panunto-Castelo A and Roque-Barreira MC (2006) Paracoccin, a GlcNAc-binding lectin from Paracoccidioides brasiliensis binds to laminin and induces TNF-alpha production by macrophages. Microbes Infect 8:704-713.) |
|
|
|
|
|
Molecular Identification |
This Study |