PV |
HLA-E
|
Major Histocompatibility Complex, Class I, E |
6p22.1 |
genotype 01:03/01:03 |
susc |
Not due to LD with HLA DRB1 or DQB1 |
USA |
Bhanusali et at., 2012 |
PV |
HLA-G
|
Major Histocompatibility Complex, Class I, G |
6p22.1 |
rs371194629 (14bp del) |
susc |
|
Israel Ashkenazi Jews |
Gazit et al.,2004 |
EPF |
HSPA1L
|
Heat Shock Protein Family A (Hsp70) Member 1 Like |
6p21.33 |
rs2227956 C>T (Thr493Met) allele T |
susc |
|
Tunisia |
Toumi et at., 2015
|
EPF |
HSPA1A
|
Heat Shock Protein Family A (Hsp70) Member 1A |
6p21.33 |
rs1043618G > C (a 5' UTR SNP) genotype C/C |
susc |
|
Tunisia |
Toumi et at., 2015
|
EPF |
HSPA1B
|
Heat Shock Protein Family A (Hsp70) Member IB |
6p21.33 |
rs1061581 G > A (a synonymous variant) genotype G/G |
susc |
|
Tunisia |
Toumi et at., 2015
|
PV |
TAP1, TAP2
|
Transporters 1 and 2, ATP Binding Cassette Subfamily B Member |
6p21.32 |
polymorphic amino acid residue frequencies |
susc |
|
Israeli Jews |
Slomov et al., 2005
|
PV + PF |
TAP1, TAP2
|
|
|
|
none |
|
Japan |
Niizeki et al., 2004
|
FS |
MHC2TA (CIITA)
|
Class II Major Histocompatibility Complex Transactivator |
16p13.13 |
rs3087456 G/G plus G/A genotypes |
susc |
Strong additive interaction between MHC2TA rs3087456 and HLA-DRB1 genotypes. No association with rs4774 (Gly500Ala) |
Brazil general population |
Piovezan and Petzl-Erler, 2013
|
PF, EPF. (FS) |
DSG1
|
Desmoglein 1 |
18q12.1 |
allele C (especially in genotype C/C) of the synonymous SNP rs12967407 (809T > C) |
susc |
ns for FS (p=0.079). Interaction between DSG1 and HLA was observed by Martel et at (2002). Haplotypes of rs8091003, rs8091117, rs16961689, rs61730306, rs34302455 not associated |
France, Tunisia, Brazil |
Martel et at., 2001; Ayed et at., 2002; Petzl-Erler and Malheiros, 2005
|
PV |
DSG3
|
Desmoglein 3 |
18q12.1 |
Two related haplotypes were associated |
susc |
Association with the haplotype possibly due to an (additional) regulatory SNP (Capon et al., 2009) |
British and Indian populations |
Capon et al., 2006
|
FS |
KIR
|
Killer Cell Immunoglobulin Like Receptor gene complex |
19q13.42 |
More than three activating KIR and higher ratios activating/inhibitory KIR. Presence of both the activating KIR3DS1 gene and its HLA-Bw4 ligand |
prot |
|
Brazil general population |
Augusto et al., 2012
|
FS |
KIR3DL2
|
Killer Cell Immunoglobulin Like Receptor KIR3DL2 |
19q13.42 |
Allele KIR3DL2*001; rs3745902 allele T (376Met) |
susc; prot |
The risk was higher for KIR3DL2*001/001 homozygotes than for 001/x heterozygotes; the risk was higher for presence of KIR3DL2*001 together with the ligands HLA-A3 or HLA-A11 than for presence of 001 in the absence of these KIR3DL2 ligands. SNP rs3745902 T (376Met) associated with reduced risk |
Brazil general population |
Augusto et al., 2015
|
FS |
LAIR1
|
Leukocyte Associated Immunoglobulin Like Receptor 1 |
19q13.42 |
rs56802430 allele G; rs11084332 allele C |
susc; prot |
Alleles of four SNPs mark increased mRNA expression: rs3826753 G, rs74463408 C, rs3745444 T, rs56802430 G. However, no link between LAIR1 expression and the disease was observed |
Brazil general population |
Camargo et at., 2016
|
FS |
LAIR2
|
Leukocyte Associated Immunoglobulin Like Receptor 2 |
19q13.42 |
rs2287828 allele T; haplotype G-T-C-A of rs2042287, rs2287828, rs2277974, rs114834145 |
susc |
The G-T-C-A haplotype is associated with both FS and higher LAIR2 mRNA levels |
Brazil general population |
Camargo et al., 2016
|
FS |
KLRG1
|
Killer Cell Lectin Like Receptor G1 |
12p13.31 |
rs1805672 G allele (A/G genotype) |
susc |
rs1805672*G allele a miR-584-5p binding site in the 3' UTR of KLRG1 |
Brazil general population |
Cipolla et al., 2016
|
FS |
IL6
|
Interleukin 6 |
7p15.3 |
rs1800795 (-174G>C) C/C genotype |
prot |
rs1800795 is in the gene promoter |
Brazil general population |
Pereira et al., 2004
|
FS, EPF |
IL4
|
Interleukin 4 |
5q31.1 |
rs2243250 (also known as −590C > T or −589C > T) genotype T/T |
susc |
rs2243250 is in the gene promoter |
Brazil, Tunisia |
Pereira et al., 2004, Toumi et al., 2013
|
EPF |
IL4 + IL4R
|
Interleukin 4, Interleukin 4 Receptor |
5q31.1, 16p12.1 |
T;A-C-A combination for rs2243250 (of IL4), and rs4787948-rs3024622-rs3024530 (of IL4R) |
susc |
|
Tunisia |
Toumi et at., 2013
|
EPF |
IL23R
|
Interleukin 23 Receptor |
1p31.3 |
rs11209026 G/G genotype |
susc |
|
Tunisia |
Ben Jmaa et al., 2018
|
EPF |
IL17A
|
Interleukin 17A |
6p12.2 |
rs3748067 C/C genotype |
susc |
|
Tunisia |
Ben Jmaa et al., 2018
|
EPF |
IL17F
|
Interleukin 17F |
6p12.2 |
rs763780 C allele |
susc |
|
Tunisia |
Ben Jmaa et al., 2018
|
EPF |
TNF
|
Tumor Necrosis Factor |
6p21.33 |
rs1800629 (-308G>A) A allele (in both the A/A and A/G genotypes) |
susc |
|
Tunisia |
Ben Jmaa et al., 2018
|
FS |
CD40LG
|
CD40 Ligand |
Xq26.3 |
rs3092945 (-726T > C) allele T |
susc |
No association was seen for the 3'UTR(CA) STR rs56074249 |
Brazil general population |
Malheiros and Petzl-Erler, 2009
|
FS |
CD40
|
CD40 Molecule |
20q13.12 |
rs1883832 (-1C>T) allele T |
prot |
rs1883832 is in the Kozak sequence that includes the translation initiation codon (AUG) and is important for ribosome binding to the mRNA |
Brazil general population |
Malheiros and Petzl-Erler, 2009
|
FS |
TNFSF13B
(BAFF; BLYS)
|
TNF Superfamily Member 13b |
13q33.3 |
rs9514828 SNP (-871C> T) allele T |
prot |
rs9514828 is in the binding site for transcription factor MZF1 and may change its affinity, resulting in altered levels of BAFF |
Brazil general population |
Malheiros and Petzl-Erler, 2009
|
FS |
CTLA4
|
Cytotoxic T-Lymphocyte Associated Protein 4 |
2q33.2 |
rs5742909 (-318C>T) allele T |
prot |
8 SNPs and 3 STR were analyzed, ranging from the promoter region of the CD28 gene to the intergenic region between CTLA4 and ICOS. rs5742909*T marks increased expression of CTLA4, which could lower the risk of Ads |
Brazil general population |
Dalla-Costa et al., 2010
|
FS |
CTLA4
|
Cytotoxic T-Lymphocyte Associated Protein 4 |
|
rs733618 (-1722TC) allele C |
susc |
rs733618*C might lead to altered alternative splicing and decreased expression and function of membrane-bound CTLA4 |
Brazil general population |
Dalla-Costa et at., 2010
|
FS |
CD86
|
CD86 Molecule |
3q13.33 |
rs1129055 (1057G> A, Ala304Thr) allele A |
prot |
rs1129055*A may alter the signal transduction pathways controlled by CD86 on antigen presenting cells. Association was significant in the sample of predominantly African ancestry, but not in Euro-Brazilians |
Brazil general population |
Dalla-Costa et al., 2010
|
FS |
PDCD1 (PD-1)
|
Programmed Cell Death 1 |
2q37.3 |
rs10204525 (PD1.6) allele A |
susc |
rs10204525 may influence binding of microRNA and transcription factors. Association was reported for the sample of European but not of predominantly African ancestry |
Brazil general population |
Braun-Prado and Petzl-Erler, 2007
|
PV + PF |
ICOS
|
Inducible T Cell Costimulator |
2q33.2 |
rs10932029 (IVS1+173T> C) allele C |
susc |
|
Poland |
Narbutt et al., 2010
|
FS |
CD59
|
CD59 Molecule (CD59 Blood Group) |
11p13 |
rs1047581 and other five SNPs. Haplotype G-G-C-C-A-A |
susc |
6 SNPs that might affect alternative splicing or mRNA stability were analyzed. Haplotype G-G-C-C-A-A also marks increased CD59 expression |
Brazil general population |
Salviano-Silva et al., 2017
|
FS |
C3
|
Complement component C3 |
19p13.3 |
rs4807895 allele T |
susc |
|
Brazil general population |
Bumiller-Bini et al., 2018 analyzed 992 SNPs of 44 complement system genes. Polymorphisms of 25% of them were associated with PF. |
FS |
C5AR1
|
Complement C5a Receptor 1 |
19q13.32 |
rs10404456 allele C |
susc |
|
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
C8A
|
Complement C8 Alpha Chain |
1p32.2 |
rs11206934 allele C |
susc |
|
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
C9
|
Complement component C9 |
5p13.1 |
rs700218 allele T |
prot |
|
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
C9
|
|
|
rs187875 allele T |
susc |
|
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
CFH
|
Complement Factor H |
1q31.3 |
rs34388368 genotype T/T |
susc |
rs34388368*T is associated with higher CFH mRNA levels in the hypodermis |
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
CR1
|
Complement C3b/C4b Receptor 1 (Knops Blood Group) |
1q32.2 |
haplotype with rs6656401 |
susc |
|
Brazil general population |
Oliveira et al., 2019
|
FS |
CR2
|
Complement C3d Receptor 2 |
1q32.2 |
rs2182911 allele C |
prot |
|
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
ITGAM (CR3)
|
Integrin Subunit Alpha M / Complement Component 3 Receptor 3 Subunit |
16p11.2 |
rs12928810 allele A |
prot |
|
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
ITGAX (CR4)
|
Integrin Subunit Alpha X / Complement Component 3 Receptor 4 Subunit |
16p11.2 |
rs11574637 allele C |
prot |
|
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
MASP1
|
Mannan Binding Lectin Serine Peptidase 1 |
3q27.3 |
rs13094773 genotype G/G; rs850309G/G;rs72549154 (Arg576Met) allele T |
prot |
higher MASP-3 levels may lower the PF risk |
Brazil general population |
Bumiller-Bini et al., 2018
|
FS |
MASP1
|
|
|
rs3864098 allele C; rs698104 allele T |
susc |
higher MASP-1 levels may contribute to PF |
Brazil general population |
Bumiller-Bini et al., 2018
|
PV + PF |
FCGR2B
|
Low Affinity Receptor IIb for Fc Fragment of IgG |
1q23.3 |
rs3219018 (-386G>C) allele C |
prot |
rs3219018 is shared by the promoters of FCGR2C and FCGR2B and leads to higher expression levels of FcgRIIb |
Germany |
Recke et al., 2015
|
PV + PF |
FCGR2C
|
Low Affinity Receptor IIc for Fc Fragment of IgG |
1q23.3 |
rs183547105 (an ORF/Stop polymorphism) ORF allele |
susc |
FCGR2C expression occur only in the presence of the ORF allele. FcgRIIb expression was increased by the presence of FCGR2C ORF. The inhibitory FcgRIIb is involved in tolerance of B lymphocytes, which may be counterbalanced by FcgRIIc expression |
Germany |
Recke et al., 2015
|
EPF + PF |
FOXP3
|
Forkhead Box P3 |
Xp11.23 |
G-A-15-C-Chaplotype of rs3761547-rs3761548-(GT)n-rs3761549-rs2294021 |
susc |
the four SNPs mark three different LD blocks |
Tunisia |
Ben Jmaa et al., 2017
|
PV |
ST18
|
ST18 C2H2C-Type Zinc Finger Transcription Factor |
8q11.23 |
rs2304365 allele A; rs17315309 allele G |
susc |
both SNPs present LD in Jews. Possibly rs17315309*G, which drives ST18 upregulation is the causal polymorphism. Association was not seen in Germans (Sarig et al., 2012) and in Chinese (Yue et al., 2014) |
Israel (Jews); Egypt; Iran |
Sarig et al., 2012; Vodo et al., 2016; Etesami et al., 2018
|
FS |
AL110292.1
|
lncRNA AL110292.1 |
14q12 |
rs7144332 allele T |
susc |
|
|
Lobo-Alves et al., 2019b. A total of 2 080 SNPs located in long ncRNAs (lncRNAs) genes were analyzed. |
FS |
LINC01176
|
Long Intergenic Non-Protein Coding RNA 1176 |
7p14.3 |
rs6942557 allele C |
susc |
|
|
Lobo-Alves et al., 2019b
|
FS |
LINC01119
|
Long Intergenic Non-Protein Coding RNA 1119 |
2p21 |
rs17774133 allele T |
susc |
|
|
Lobo-Alves et al., 2019b
|
FS |
lnc-PREX1-7:1
|
lncRNA lnc-PREX1-7:1 |
20q13 |
rs6095016 allele A |
prot |
|
|
Lobo-Alves et al., 2019b
|
FS |
AC009121.1
|
lncRNA AC009121.1 |
16p13.13 |
rs7195536 allele G |
prot |
|
|
Lobo-Alves et al., 2019b
|
FS |
AC133785.1
|
lncRNA AC133785.1 |
2q21.1 |
rs1542604 allele T |
prot |
|
|
Lobo-Alves et al., 2019b
|