Adhesion |
afa/draB
|
F: TAAGGAAGTGAAGGAGCGTG R: CCAGTAACTGTCCGTGACA |
810 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
crlA
|
F: TTTCGATTGTCTGGCTGTATG R: CTTCAGATTCAGCGTCGTC |
250 |
Maurer et al., 1998Maurer JJ, Brown TP, Steffens WL, Thayer SG. The occurrence of ambient temperature-regulated adhesins, curli, and the temperature-sensitive hemagglutinin tsh among avian Escherichia coli. Avian Disease 1998;42:106-18.
|
fimC
|
F: GGGTAGAAAATGCCGATGGTG R: CGTCATTTTGGGGGTAAGTGC |
477 |
Janssen et al., 2001Janssen T, Schwarz C, Preikschat P, Voss M, Philipp HC, Wieler LH. Virulence-associated genes in avian pathogenic Escherichia coli (APEC) isolated from internal organs of poultry having died from colibacillosis. International Journal of Medical Microbiology 2001;291:371-8.
|
hrlA
|
F: TCACTTGCAGACCAGCGTTTC R: GTAACTCACACTGCTGTCACCT |
537 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
iha
|
F: TAGTGCGTTGGGTTATCGCTC R: AAGCCAGAGTGGTTATTCGC |
609 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
papC
|
F: TGATATCACGCAGTCAGTAGC R: CCGGCCATATTCACATAAC |
501 |
Janssen et al., 2001Janssen T, Schwarz C, Preikschat P, Voss M, Philipp HC, Wieler LH. Virulence-associated genes in avian pathogenic Escherichia coli (APEC) isolated from internal organs of poultry having died from colibacillosis. International Journal of Medical Microbiology 2001;291:371-8.
|
sfa/focD
|
F: GTCCTGACTCATCTGAAACTGCA R: CGGAGAACTGGGTGCATCTTA |
1242 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
tsh
|
F: ACTATTCTCTGCAGGAAGTC R: CTTCCGATGTTCTGAACGT |
824 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
mat
|
F: TATACGCTGGACTGAGTCGTG R: CAGGTAGCGTCGAACTGTA |
899 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
Invasion |
gimB
|
F: TCCAGATTGAGCATATCCC R: CCTGTAACATGTTGGCTTCA |
736 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
ibeA
|
F: TGGAACCCGCTCGTAATATAC R: CTGCCTGTTCAAGCATTGCA |
342 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
tia
|
F: AGCGCTTCCGTCAGGACTT R: ACCAGCATCCAGATAGCGAT |
512 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
Iron aquision |
chuA
|
F: GACGAACCAACGGTCAGGAT R: TGCCGCCAGTACCAAAGACA |
278 |
Clermont et al., 2000Clermont O, Bonacorsi S, Bingen E. Rapid and simple determination of the Escherichia coli phylogenetic group. Applied and Environmental Microbiology Journal 2000;66:4555-8.
|
fyuA
|
F: GCGACGGGAAGCGATGACTTA R: CGCAGTAGGCACGATGTTGTA |
774 |
Schubert et al., 2002Schubert S, Picard B, Gouriou S, Heesemann J, Denamur E.Yersinia high-pathogenicity island contributes to virulence in Escherichia coli causing extraintestinal infections. Infection and Immunity 2002;70:5335-7.
|
ireA
|
F: ATTGCCGTGATGTGTTCTGC R: CACGGATCACTTCAATGCGT |
384 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
iroN1
|
F: ATCCTCTGGTCGCTAACTG R: CTGCACTGGAAGAACTGTTCT |
847 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
irp2
|
F: AAGGATTCGCTGTTACCGGAC R: TCGTCGGGCAGCGTTTCTTCT |
413 |
Schubert et al., 2002Schubert S, Picard B, Gouriou S, Heesemann J, Denamur E.Yersinia high-pathogenicity island contributes to virulence in Escherichia coli causing extraintestinal infections. Infection and Immunity 2002;70:5335-7.
|
iucD
|
F: ACAAAAAGTTCTATCGCTTCC R: CCTGATCCAGATGATGCTC |
714 |
Janssen et al., 2001Janssen T, Schwarz C, Preikschat P, Voss M, Philipp HC, Wieler LH. Virulence-associated genes in avian pathogenic Escherichia coli (APEC) isolated from internal organs of poultry having died from colibacillosis. International Journal of Medical Microbiology 2001;291:371-8.
|
sitD chr.
|
F: ACTCCCATACACAGGATCTG R: CTGTCTGTGTCCGGAATGA |
554 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
sitD ep.
|
F: TTGAGAACGACAGCGACTTC R: CTATCGAGCAGGTGAGGA |
1052 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
Serum resistance |
cvi/cva
|
F: TCCAAGCGGACCCCTTATAG R: CGCAGCATAGTTCCATGCT |
598 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
iss
|
F: ATCACATAGGATTCTGCCG R: CAGCGGAGTATAGATGCCA |
309 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
neuC
|
F: GGTGGTACATTCCGGGATGTC R: AGGTGAAAAGCCTGGTAGTGTG |
676 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
kpsMT II
|
F: GCGCATTTGCTGATACTGTTG R: CATCCAGACGATAAGCATGAGCA |
280 |
Genbank accession number X53819 |
ompA
|
F: AGCTATCGCGATTGCAGTG R: GGTGTTGCCAGTAACCGG |
919 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
traT
|
F: GTGGTGCGATGAGCACAG R: TAGTTCACATCTTCCACCATCG |
430 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
Toxins |
cnf1/2
|
F: TCGTTATAAAATCAAACAGTG R: CTTTACAATATTGACATGCTG |
446 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
sat
|
F: TGCTGGCTCTGGAGGAAC R: TTGAACATTCAGAGTACCGGG |
667 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
astA
|
F:TGCCATCAACACAGTATATCC R: TAGGATCCTCAGGTCGCGAGTGACGGC |
116 |
Yamamoto et al., 1996Yamamoto T, Echeverria P. Detection of the enteroaggregative Escherichia coli heat-stable enterotoxin 1 gene sequences in enterotoxigenic E. coli strains pathogenic for humans. Infection and Immunity 1996;64:1441-5.
|
vat
|
F: TCCTGGGACATAATGGTCAG R: GTGTCAGAACGGAATTGTC |
981 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
hlyA
|
F: GTCCATTGCCGATAAGTTT R: AAGTAATTTTTGCCGTGTTTT |
352 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
Autotransporter serine protease |
pic
|
F: ACTGGATCTTAAGGCTCAGG R: TGGAATATCAGGGTGCCACT |
409 |
Ewers et al., 2007Ewers C, Li G, Wilking H, Kie?ling S, Alt K, Antáo EM, et al. Avian pathogenic, uropathogenic, and newborn meningitis-causing Escherichia coli: how closely related are they? International Journal of Medical Microbiology 2007;297:163-76.
|
Pathogenicity island associated gene |
malX
|
F: GGACATCCTGTTACAGCGCGCA R: TCGCCACCAATCACAGCCGAAC |
922 |
Johnson et al., 2001 |