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Determinants of anuran assemblages in Amazonian White-sand Ecosystems

Abstract

Amazonian white-sand ecosystems have predominantly sandy soils and a high amount of endemism, and several species found within them are adapted to long periods of drought. However, little is known about the variation in the structure of anuran assemblages in these ecosystems. Considering that most species are not uniformly distributed in heterogeneous landscapes, we tested the hypothesis that anuran assemblage variation in white-sand ecosystems is related to changes in vegetation structure. Specifically, we focused on a heterogeneous patch of white-sand ecosystems of the central Amazon and evaluated whether vegetation structure and soil characteristics, including root depth, influence the richness, abundance, and composition of anuran assemblages. Our results showed that low amounts of clay in the soil play an important role in structuring vegetation in these ecosystems, and these are the main factors that organize anuran assemblages. The Campinaranas close to the water bodies have a high species richness, while Campina landscapes limit the occupation of most of species. Our findings indicate that anurans undergo environmental filtering in white-sand ecosystems and are organized into hierarchical subgroups, in which only species with specialized reproduction can successfully occupy the most water-restricted environments.

Key words
Structure; environmental filters; Campinas; Campinaranas; nestedness

INTRODUCTION

The Amazon, although predominantly formed by tropical rainforests (Veloso et al. 1991VELOSO HP, RANGEL FILHO ALR & LIMA JCA. 1991. Classificação da vegetação brasileira adaptada a um sistema universal. Instituto Brasileiro de Geografia e Estatística, Rio de Janeiro, p. 46-84.), contains various other habitats that are distinguished by their species composition or, indirectly, by topographic, climatic (rainfall, temperature, wind velocity, air humidity, among others), and hydrological characteristics (Terborgh & Andresen 1998TERBORGH J & ANDRESEN E. 1998. The Composition of Amazonian Forests: Patterns at Local and Regional Scales. J Trop Ecol 14: 645-664.). Such a complex vegetation structure in the Amazon arises from variations in edaphic, biological, microclimatic factors, and/or from anthropogenic interferences taking place at different spatial scales (Ab’Saber 2002AB’SABER NA. 2002. Bases para o estudo dos ecossistemas da Amazônia brasileira. Estudos Avançados 16: 7-30.). Within this variety of forest habitat types, white-sand ecosystems are among the most distinctive (Pires & Prance 1985PIRES JM & PRANCE GT. 1985. The types of vegetation in the Brazilian Amazon. Pergamon Press, Oxford, p. 109-145.).

Although historically overlooked in the literature (Adeney et al. 2016ADENEY JM, CHRISTENSEN, NL VICENTINI A & COHN-HAFT M. 2016. White-sand Ecosystems in Amazonia. Biotropica 48: 7-23.), white-sand ecosystems are patchily distributed across the entire Amazon and resemble an island system of vegetation growing on sandy soils (Prance 1996PRANCE GT. 1996. Islands in Amazonia. Philosophical Transactions: Biol Sci 351: 823-833.). These ecosystems have a distinct vegetation structure that is adapted to long periods of drought (Anderson 1981ANDERSON AB. 1981. White-Sand Vegetation of Brazilian Amazonia. Biotropica 13: 199-210., Prance 1996PRANCE GT. 1996. Islands in Amazonia. Philosophical Transactions: Biol Sci 351: 823-833.). They range from open heathlands (Campinas), dominated by herbaceous vegetation, to tall forests (Campinaranas) that are susceptible to seasonal flooding (Vicentini 2004VICENTINI A. 2004. A vegetação ao longo de um gradiente edáfico no Parque Nacional do Jaú. In: Janelas para a biodiversidade no Parque Nacional do Jaú: uma estratégia para o estudo da biodiversidade na Amazônia, 105-131 p., Damasco et al. 2013DAMASCO G, VICENTINI A, CASTILHO CV, PIMENTEL TP & NASCIMENTO HEM. 2013. Disentangling the role of edaphic variability, flooding regime and topography of Amazonian white-sand vegetation. J Veget Sci 24: 384-394.). The patterns of diversity, evolutionary processes, and ecological services of white-sand ecosystems are key elements for understanding the dynamics of the Amazon region (Anderson 1981ANDERSON AB. 1981. White-Sand Vegetation of Brazilian Amazonia. Biotropica 13: 199-210., Fine & Bruna 2016FINE PA & BRUNA EM. 2016. Neotropical White-sand Forests: Origins, Ecology and Conservation of a Unique Rain Forest Environment. Biotropica 48: 5-6., Adeney et al. 2016ADENEY JM, CHRISTENSEN, NL VICENTINI A & COHN-HAFT M. 2016. White-sand Ecosystems in Amazonia. Biotropica 48: 7-23.). Studies of birds and plants have shown that white-sand ecosystems have high levels of endemism, distinct species composition, and lower species richness when compared to other Amazonian habitats, such as upland forests and wetlands (Adeney 2009ADENEY JM. 2009. Remote sensing of fire, flooding, and white sand ecosystems in the Amazon (Doctoral dissertation, Duke University)., Fortunel et al. 2014FORTUNEL C, PAINE CT, FINE PV, KRAFT NJ & BARALOTO C. 2014. Environmental factors predict community functional composition in Amazonian forests. J Ecol 102(1): 145-155., Borges et al. 2015BORGES SH, CORNELIUS C, RIBAS C, ALMEIDA R, GUILHERME E & ALEIXO A. 2015. What is the avifauna of Amazonian white-sand vegetation? Bird Conserv Internat 26: 192-204.). Alonso et al. (2013)ALONSO JA, METZ MR & FINE PV. 2013. Habitat specialization by birds in western Amazonian white-sand forests. Biotropica 45: 365-372 and Borges (2013)BORGES SH. 2013. Bird species distribution in a complex Amazonian landscape: species diversity, compositional variability and biotic-environmental relationships. Stud in Neotro Fauna and Environ 48: 106-118. demonstrated that, in the central and western Amazon, white-sand ecosystems greatly contribute to the beta diversity of bird assemblages. However, there is little information on how environmental factors affect the structure of assemblages of other animal groups that inhabit white-sand ecosystems.

Anuran amphibians are particularly sensitive to physical changes in the environment, and some of their behavioral and ecological traits can provide information about their spatial distributions (Gardner et al. 2007GARDNER TA, RIBEIRO-JÚNIOR MA, BARLOW J, ÁVILA-PIRES TC, HOOGMOED MS & PERES CA. 2007. The value of primary, secondary, and plantation forests for a neotropical herpetofauna. Conserv Biol: 1-13., Ribeiro et al. 2012RIBEIRO JW, LIMA AP & MAGNUSSON WE. 2012. The effect of riparian zones on species diversity of frogs in Amazonian forests. Copeia: 375-384.). For example, the diversity of reproductive modes among anuran species can promote distinct species distributions (Duellman 1999DUELLMAN WE. 1999. Patterns of distribution of amphibians: a global perspective. JHU Press, p. 10-13.). Species that lay their eggs directly in water may have a more restricted spatial distribution due to greater dependence on water bodies (Haddad & Prado 2005HADDAD CF & PRADO CP. 2005. Reproductive modes in frogs and their unexpected diversity in the Atlantic Forest of Brazil. BioScience 55(3): 207-217.), while species that do not depend on water for tadpole development may show wider spatial distributions (Menin et al. 2007MENIN M, LIMA AP, MAGNUSSON WE & WALDEZ F. 2007. Topographic and edaphic effects on the distribution of terrestrially reproducing anurans in Central Amazonia: Mesoscale spatial patterns. J Trop Ecol 23: 539-547.). Some studies have shown that the spatial distribution of Amazonian anurans changes accordingly to the size of the streams, edaphic factors, and vegetation structure (see Menin et al. 2007MENIN M, LIMA AP, MAGNUSSON WE & WALDEZ F. 2007. Topographic and edaphic effects on the distribution of terrestrially reproducing anurans in Central Amazonia: Mesoscale spatial patterns. J Trop Ecol 23: 539-547., Condrati 2009CONDRATI LH. 2009. Padrões de distribuição e abundância de anuros em áreas ripárias e não ripárias de floresta de terra firme na Reserva Biológica do Uatumã - Amazônia Central (MSc Dissertation). Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil. (Unpublished)., Rojas-Ahumada et al. 2012ROJAS-AHUMADA DP, LANDEIRO VL & MENIN M. 2012. Role of environmental and spatial processes in structuring anuran communities across a tropical rain forest. Biol J Linn Soc 37: 865-873., Ferreira et al. 2018FERREIRA AS, JEHLE R, STOW AJ & LIMA AP. 2018. Soil and forest structure predicts large-scale patterns of occurrence and local abundance of a widespread Amazonian frog. PeerJ 6: e5424). However, it is not known whether these factors determine the structure of anuran assemblages in white-sand ecosystems. In this study, we evaluate some of the environmental factors influencing the distribution of anurans in a patch of white-sand ecosystems in the central Amazon and describe the structural pattern of the anuran assemblages in this unique environment.

The formation of hierarchical subgroups is a common structural pattern in both island systems and environments characterized by some degree of spatial isolation or strong resource limitation, such as the white-sand ecosystems, mainly Campinas that form islands within a forested matrix (Capurucho et al. 2013CAPURUCHO JMG, CORNELIUS C, BORGES SH, COHN-HAFT M, ALEIXO A, METZGER JP & RIBAS CC. 2013. Combining phylogeography and landscape genetics of Xenopipo atronitens (Aves: Pipridae), a white sand campina specialist, to understand Pleistocene landscape evolution in Amazonia. Biolog J Lin Soc 110(1): 60-76.). In such environments, assemblages in resource-constrained environments have lower species richness and are formed by subsets of more species-rich assemblages (Patterson & Atmar 1986PATTERSON BD & ATMAR W. 1986. Nested subsets and the structure of insular mammalian faunas and archipelagos. Biol J Linn Soc 28: 65-82., Worthen 1996WORTHEN WB. 1996. Community composition and nested-subset analyses: basic descriptors for community ecology. Oikos: 417-426., Wright et al. 1998WRIGHT DH, PATTERSON BD, MIKKELSON G, CUTLER AH & ATMAR W. 1998. A comparative analysis of nested subset patterns of species composition. Oecologia 113: 1-20., Fleishman & Nally 2002FLEISHMAN E & NALLY RM. 2002. Topographic determinants of faunal nestedness in great basin butterfly assemblages: applications to conservation planning. Conserv Biol 16: 422-429.). Forest structure on sandy soils ranges from shrubs to trees over 20 meters tall (Anderson 1981ANDERSON AB. 1981. White-Sand Vegetation of Brazilian Amazonia. Biotropica 13: 199-210.). Therefore, we expect that the anuran assemblages in these ecosystems should vary according to the forest gradient and that the species composition would differ between the main types of white-sand ecosystems. Because few anuran species have adaptations for living in water-restricted environments, we also predict that the anuran assemblage found in Campina environments will consist of a subgroup of species from the typical assemblage of campinarana environments.

MATERIALS AND METHODS

Study area

The study was carried out in a research module of the Biodiversity Research Program (PPBio) in the Rio Negro Sustainable Development Reserve (RDS Rio Negro) in the state of Amazonas, Brazil. The RDS is located on the right bank of the lower Negro River and is part of the central ecological corridor of the Amazon and the mosaic of protected areas of the lower Negro River (03° 04’ 14.5” S; 60° 44’ 27.2” W).

The reserve is classified as Dense Ombrophylous Forest; the module crosses two forest formations that are typical of white-sand ecosystems and is mainly surrounded by non-flooded upland forests: white-sand scrub and woodland (Campina and Campinarana, respectively). The Campina in our study is formed by stunted herbaceous-shrub vegetation, which is mainly made up of sclerophyllous species (Fig. 1a). Dry Campinarana is a forested habitat with a 15 to 20 m high canopy and a high density of shrubs and trees with canopies of low stature (Fig. 1b), while wet Campinarana has temporary ponds, resulting in high humidity levels (Fig 1c) (Vicentini 2016VICENTINI A. 2016. The Evolutionary History of Pagamea (Rubiaceae), a White-sand Specialist Lineage in Tropical South America. Biotropica 48: 58-69., Adeney et al. 2016ADENEY JM, CHRISTENSEN, NL VICENTINI A & COHN-HAFT M. 2016. White-sand Ecosystems in Amazonia. Biotropica 48: 7-23.). The white-sand types of vegetation (Campinas and Campinaranas) are distributed in small patches within the Reserve and, together, correspond to 1.8% of the total area of the conservation unit.

Figure 1
Examples of types of white-sand vegetation: a) Campina, b) Riparian Campinarana, c) Non-riparian Campinarana.

According to Köppen’s classification, the predominant local climate is the Afi (Tropical Rainy type), with an average annual temperature of 25.6 ºC and average annual rainfall of 2,300 mm (INMET 2014INMET - INSTITUTO NACIONAL DE METEOROLOGIA. 2014. Disponível em: http://www.inmet.gov.br.
http://www.inmet.gov.br...
). The driest period occurs between July and October, and the wettest between December and May (Silva 2018SILVA GTD. 2018. Turismo em Comunidades Tradicionais: políticas de desenvolvimento local e territorialidades humanas na RDS do Rio Negro (Iranduba - AM).).

Sampling design

The configuration of the sampling module follows the long-term-ecological survey and rapid assessment (RAPELD) method for inventories of biodiversity (Magnusson et al. 2013MAGNUSSON WE, ALBERNAZ AL, HERO JM, LAWSON BE, CASTILHO CVD, DRUCKER D & LIMA AP. 2013. Biod e monit ambiental integrado: o sistema RAPELD na Amazônia.). We sampled 20 plots of 250 m in length, which were organized in two parallel 5 km long transects and three connecting trails of 1 km each. The plots were separated by 200 m to 1 km (Figure 2). The plots in yellow and green followed a contour line of local topography to reduce internal heterogeneity in soil, drainage properties and, consequently, vegetation composition. The variation in altitude within each plot is minimum (Magnusson et al. 2013MAGNUSSON WE, ALBERNAZ AL, HERO JM, LAWSON BE, CASTILHO CVD, DRUCKER D & LIMA AP. 2013. Biod e monit ambiental integrado: o sistema RAPELD na Amazônia.). The plots encompassed three white-sand vegetation types: riparian Campinarana, non-riparian Campinarana, and Campina. However, this system does not allow for stratified sampling of less common or scattered environmental features. In the RDS Rio Negro, the Campina and riparian Campinarana occur in small patches within the landscape; therefore, the distance between plots varied (minimum distance = 200 m) to allow for the inclusion of sampling units covering these vegetation types (Fig. 2). The riparian Campinarana plots in blue (Fig. 2) were established where streams cross the trails since regularly spaced plots did not occur frequently in this important habitat. Riparian plots follow the margin of the stream at 1.5 m from the water (Magnusson et al. 2013MAGNUSSON WE, ALBERNAZ AL, HERO JM, LAWSON BE, CASTILHO CVD, DRUCKER D & LIMA AP. 2013. Biod e monit ambiental integrado: o sistema RAPELD na Amazônia.).

Figure 2
Location of the PPBio module in the Rio Negro Sustainable Development Reserve, Amazonas, Brazil. Sampling configuration and distribution of the 20 sampling plots.

Sampling of anuran species

Anurans were sampled using time-limited and space-limited auditory and visual searches along the 250 m of each plot. These are complementary methods, suitable for surveying distribution and abundance of anurans in short- and long-term studies (Zimmerman 1991ZIMMERMAN BL. 1991. Distribution and abundance of frogs in a central Amazonian Forest (Doctoral dissertation, Florida State University)., Tocher 1998TOCHER M. 1998. Diferenças na composição de espécies de sapos entre três tipos de floresta e campo de pastagem na Amazônia central. In: Gascon C & Moutinho P (Eds), Floresta Amazônica: Dinâmica, regeneração e manejo. Ministério da Tecnologia e Ciência, Manaus, p. 219-232., Menin 2005MENIN M. 2005. Padrões de distribuição e abundância de anuros em 64 km2 de floresta de terra-firme na Amazônia Central (Doctoral dissertation, Instituto Nacional de Pesquisas da Amazônia e Universidade Federal do Amazonas) Manaus, Brazil.). Surveys were undertaken between 16:30 and 18:30 to detect predominantly diurnal and crepuscular species (e.g., Allobates femoralis and Adenomera spp.), and between 19:30 and 20:30 to detect predominantly nocturnal species. Each plot was surveyed four times by a researcher and a field assistant, who were ten meters apart from each other while walking through the plot scanning leaf litter, fallen trunks, and branches, as well as trunks and their branches up to 5 m height, with the aid of spotlights. The length of the sampling period varied between 30 min (diurnal), and 50 min (nocturnal). Auditory sampling consisted of recording the vocalizations of acoustically active individuals within a radius of 50 m.

As a recording criterion, we used the detection of a single individual per species, in each 10 m long segment of the 250 m plot, which meant that the maximum number of records per species in a given survey in each plot was 25. This standardization was necessary due to the large variation in the abundance of individuals of different species, especially between small-sized and highly abundant species (e.g., Adenomera spp., Phyzelaphryne spp., Pristimantis spp.).

Sampling was performed during the rainy season (December 2020 to March 2021). Rainy periods are best for anuran sampling due to increased availability of water bodies and high humidity in terrestrial sites (Lima et al. 2012LIMA AP, MAGNUSSON WE, MENIN M, ERDTMANN LK, RODRIGUES DDJ, KELLER C & HÖDL W. 2012. Guia de sapos da Reserva Adolpho Ducke-Amazônia Central.). The abundance value for each species in each plot used in analyses was the maximum number of individuals recorded for each species among the four sampling iterations.

A maximum of three voucher specimens of each species were collected. The specimens were killed with a lidocaine-based anesthetic, fixed in 10% formalin, and preserved in 70% ethanol. Voucher specimens were deposited in the INPA Herpetological Collection (INPA-H) in Manaus, Amazonas, Brazil. Individuals were identified at species level based on morphological and acoustic characteristics described in the identification guides and species’ descriptions. The scientific nomenclature of amphibian species follows Segalla et al. (2021)SEGALLA MV ET AL. 2021. List of Brazilian amphibians. Herpeto Bras 10(1): 121-217.. All individuals were collected under license No. 72434-1 from IBAMA/SISBio (Brazilian Ministry of the Environment). This license was subject to the approval of all ethical procedures for capturing and collecting species and specimens. We followed the guidelines of the Resolution No. 08/12/2012 of the Federal Council of Biology (CFBIO), which specifies the procedures for the capture, containment, release, and collection of vertebrates.

Environmental variables

Three environmental predictors were measured in each plot to assess their influence on anuran assemblage structure: the vegetation structure (height, canopy opening, and understory density) and root depth were also measured. These variables can influence both richness and composition of arboreal and terrestrial anurans (Pearman 1997PEARMAN PB. 1997. Correlates of Amphibian Diversity in an Altered Landscape of Amazonian Ecuador: Correlaciones de la Diversidad de Anfibios en un Paisaje Alterado de la Amazonía Ecuatoriana. Conserv Biol 11(5): 1211-1225.). The proportion of clay, which is related to soil drainage, was measured because edaphic variables affect primary production and also influence trophic networks (Menin et al. 2007MENIN M, LIMA AP, MAGNUSSON WE & WALDEZ F. 2007. Topographic and edaphic effects on the distribution of terrestrially reproducing anurans in Central Amazonia: Mesoscale spatial patterns. J Trop Ecol 23: 539-547., Cintra et al. 2013CINTRA BBL, SCHIETTI J, EMILLIO T, MARTINS D, MOULATLET G, SOUZA P, LEVIS C, QUESADA CA & SCHÖNGART J. 2013. Soil physical restriction sand hydrology regulate stand age and wood biomass turnover rates of Purus-Madeira interfluvial wetlands in Amazonia. Biogeosciences 10(11): 7759-7774.). Clay and sand contents soil are good proxies for distance to the nearest stream (Menin et al. 2007MENIN M, LIMA AP, MAGNUSSON WE & WALDEZ F. 2007. Topographic and edaphic effects on the distribution of terrestrially reproducing anurans in Central Amazonia: Mesoscale spatial patterns. J Trop Ecol 23: 539-547.), and clay content is associated with water bodies and the availability of breeding sites for anurans (Rojas-Ahumada et al. 2012ROJAS-AHUMADA DP, LANDEIRO VL & MENIN M. 2012. Role of environmental and spatial processes in structuring anuran communities across a tropical rain forest. Biol J Linn Soc 37: 865-873.).

Soil structure and root depth were measured every 50 m along the center line of each plot. In order to measure depth of root, a graduated ruler was inserted into the ground until it touched a root, and the mean of the measurements for each plot was used in the analyses. Composite soil-structure samples were collected with a drill at six points along each plot, to a depth of 10 cm, following the PPBio soil collection protocol (available at http: //ppbio.inpa.gov.br). Soil particle size analysis was done at the Soil Laboratory of the Department of Agronomy, INPA, and followed the total dispersion protocol adapted from EMBRAPA (Teixeira et al. 2017TEIXEIRA TC, DONAGEMMA GK, FONTANA A & TEIXEIRA WG. 2017. Manual de Métodos de Análise de Solo. 3rd ed, Brasília: Embrapa.).

Vegetation structure was quantified using LiDAR (light detection and ranging) technology, a remote sensing system used to measure distances to structures as a function of the time elapsed between the emission and return of a laser beam (Lefsky et al. 2002LEFSKY MA, COHEN WB, PARKER GG & HARDING DJ. 2002. Lidar remote sensing for ecosystem studies: Lidar, an emerging remote sensing technology that directly measures the three-dimensional distribution of plant canopies, can accurately estimate vegetation structural attributes and should be of particular interest to forest, landscape, and global ecologists. BioScience 52(1): 19-30.). In this study, we used TML (terrestrial mobile LiDAR). Fourteen metrics describing vegetation height, canopy opening, and understory density were recorded using the TML.

Statistical analyses

We used sample-based rarefaction (interpolation) and extrapolation curves with 95% unconditional confidence intervals to compare total frog richness between flooding stages richness and interpolation (rarefaction) and extrapolated curves of non-riparian Campinarana (n = 09 plots), riparian Campinarana (n = 06) and Campina (n =05) were generated using the “iNEXT” package (Hsieh et al. 2016).

To evaluate the structure of the anuran assemblages in a two-dimensional space in relation to vegetation types (Campina, riparian Campinarana, and non-riparian Campinarana), we used principal coordinate analysis (PCoA) ordinations based on the Bray-Curtis dissimilarity index for relative-abundance data. The first two axes captured 64% (PCoA 1 = 52%; PCoA 2 = 12%) of the original species variance. PCoA analyses were conducted in R (R Core Team 2021R CORE TEAM. 2021. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. https://cran.r-project.org/doc/manuals/r- release/fullrefman.pdf.
https://cran.r-project.org/doc/manuals/r...
) using the adonis function from the vegan package version 2.5-7 (Oksanen et al. 2020OKSANEN J ET AL. 2020. Vegan community ecology package version 2.5-7 November 2020. R Project for Statistical Computing: Vienna, Austria.). To test whether the species composition differs between Campina, riparian Campinarana, and non-riparian Campinarana, pairwise comparisons between the vegetation types were made using the anova.manyglm function.

To investigate whether environmental variables influence the structure of the anuran assemblages, the manyglm multivariate function, extension of generalized linear models (Warton et al. 2012WARTON DI, WRIGHT ST & WANG Y. 2012. Distance-based multivariate analyses confound location and dispersion effects. Meth Ecol Evol 3(1): 89-101.) in the mvabund package version 4.1.3 was used (Wang et al. 2012WANG YI, NAUMANN U, WRIGHT ST & WARTON DI. 2012. mvabund-an R package for model-based analysis of multivariate abundance data. Meth Ecol Evol 3(3): 471-474.). The effect of environmental variables was evaluated using the anova.manyglm function, which re-samples abundance data while accounting for correlations among species. The p-value was calculated from 999 bootstraps. A multivariate generalized linear model was fitted using the mvabund package version 4.1.3, in which the vegetation types were entered as the predictor variable and the species-abundance data as the response variable, which was modeled using a negative binomial distribution and a log link function. Therefore, we have:

Assemblages Structure = vegetation structure + root depth + clay proportion

Vegetation structure variables were tested for multicollinearity using Pearson’s multiple correlation (Supplementary Material - Table SI). LiDAR metrics were summarized in a principal component analysis (PCA) (Table SII). Pearson’s correlation values were also used to assess the independence between environmental variables (PCA of vegetation structure, root depth, and proportion of clay). These variables were included in the model and maintained in subsequent analyses (Table SIII) because they were not correlated. The summary of vegetation structure, root depth and clay proportion data used in statistical tests are presented in Table SIV.

Histograms of species distributions (Dambros 2014DAMBROS C. 2014. poncho.R. figshare. Software R. In https://doi.org/10.6084/m9.figshare.753347.v3.
https://doi.org/10.6084/m9.figshare.7533...
) throughout the environmental gradients were generated to describe the responses of each species to the environmental variables. All statistical analyses were undertaken using the statistical software R version 3.6.1 (R Core Team 2021R CORE TEAM. 2021. R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing. https://cran.r-project.org/doc/manuals/r- release/fullrefman.pdf.
https://cran.r-project.org/doc/manuals/r...
).

RESULTS

Species sampling

We found 19 anuran species, which were distributed in six families (Table I). The families with the highest number of species recorded were Hylidae and Leptodactylidae (six species each), followed by Bufonidae (two species), and Aromobatidae, Centrolenidae, Eleutherodactylidae, Microhylidae and Pipidae (one species each).

Table I
List of anuran species recorded in the Rio Negro Sustainable Development Reserve and sum of occurrences in the different sampled habitats.

The number of species recorded per sampling plot varied from 2 to 13. The mean abundance of each species, recorded per sample plot, is presented in the Supplementary material (Table SV). The most widely distributed species in the sampled area were Adenomera aff. andreae, Osteocephalus vilarsi, and Trachycephalus cunauaru, all of which were recorded in at least 75% of the plots. Eight species were recorded in 25-60% of the plots, seven species were found in only 20% of the plots, and four species were recorded only in the riparian Campinarana (Vitreorana ritae, Phyllomedusa vailantii, Leptodactylus riveroi, and Boana lanciformis). There were no species unique to the non-riparian Campinarana, nor to the Campina (Table I). Pipa pipa was excluded from the analyses because it an exclusively aquatic species and only one individual within a non-riparian Campinarana plot recorded. The specimen was inhabiting a shallow, clean water pool located approximately two meters distant from a water body.

During the sample-based rarefaction curves, richness estimates detected by no-riparian Campinarana and riparian Campinarana were higher than the richness detected by Campina. However, extrapolation to 11 plots indicates that the 95% confidence intervals converge, so white sand types of vegetation richness differ in the total number of species they support, but the curves demonstrate that we have reached the asymptote, and that the data is representative (Supplementary Material - Figure S1).

Species composition

Two PCoA axes were used to visualize how the compositions of anuran assemblages differ across the main vegetation types sampled. The ordination evidenced two major clusters, which corresponded significantly to the most distinct vegetation types (Campina and Campinarana). Tendencies for compositional divergences were also evident when comparing riparian and non-riparian Campinarana assemblages, but their clusters overlapped in the ordination space (Figure 3).

Figure 3
The first two axes of a principal coordinate analysis (PCoA) based on the relative abundance of anuran species, showing the 95% confidence ellipses of the plot samples in relation to the types of white-sand vegetation in the RDS Rio Negro. Black = Campina, red = non-riparian Campinarana, blue = riparian Campinarana.

The species composition of anuran assemblages was influenced by vegetation structure (p ≤ 0.01) and clay proportion (p ≤ 0.01), but not by root depth (p = 0.12) (Table II). The soil from the riparian Campinarana had a higher proportion of clay than the other vegetation types. Pairwise comparisons showed differences in the species composition between all the analyzed vegetation types (p ≤ 0.005 in all cases) (Table II).

Table II
Results of the manyglm analysis performed to test the relationship between the structure of the anuran assemblage and the environmental variables, and pairwise comparisons between the Campina, non-riparian and riparian Campinarana in the RDS Rio Negro. Results show the deviation table with test values (Wald) and frequentist probability values (p) based on 999 bootstrap interactions with PIT trap re-sampling. LR stands for logarithmic odds ratio statistic.

All species found in the Campina were also recorded in the other vegetation types; while 86% of the species found in the non-riparian Campinarana were also recorded in the riparian Campinarana. The anuran assemblage of the Campina generally consisted of a subgroup of the non-riparian Campinarana assemblage, and both these assemblages were mainly subgroups of the riparian Campinarana assemblage (Figure 4). The species ordination according to clay proportion and vegetation structure followed a similar pattern of distribution (Figures S2 and S3).

Figure 4
Distribution of records by abundance of anuran species in relation to types of white-sand vegetation. Black = Campina, red = non-riparian Campinarana, blue = riparian Campinarana.

DISCUSSION

Our results clearly show that the structure of anuran assemblages differs between the two main types of white-sand vegetation analyzed (Campina and Campinarana), which is a pattern that has also been reported for plant and bird assemblages (Adeney 2009ADENEY JM. 2009. Remote sensing of fire, flooding, and white sand ecosystems in the Amazon (Doctoral dissertation, Duke University)., Borges et al. 2015BORGES SH, CORNELIUS C, RIBAS C, ALMEIDA R, GUILHERME E & ALEIXO A. 2015. What is the avifauna of Amazonian white-sand vegetation? Bird Conserv Internat 26: 192-204.). Such differences in plant, bird and anuran assemblages in white-sand ecosystems are mainly attributed to variations of edaphic factors (Borges 2013BORGES SH. 2013. Bird species distribution in a complex Amazonian landscape: species diversity, compositional variability and biotic-environmental relationships. Stud in Neotro Fauna and Environ 48: 106-118., Damasco et al. 2013DAMASCO G, VICENTINI A, CASTILHO CV, PIMENTEL TP & NASCIMENTO HEM. 2013. Disentangling the role of edaphic variability, flooding regime and topography of Amazonian white-sand vegetation. J Veget Sci 24: 384-394.).

It is observed that the variation of anuran assemblages across the white-sand ecosystems was mainly influenced by both vegetation structure and the proportion of clay in the soil. Changes in vegetation affect demographic patterns in animal assemblages (de Vasconcelos et al. 2013DE VASCONCELOS SS, FEARNSIDE PM, DE ALENCASTRO GRAÇA PML, NOGUEIRA EM, DE OLIVEIRA LC & FIGUEIREDO EO. 2013. Forest fires in southwestern Brazilian Amazonia: Estimates of area and potential carbon emissions. Forest Ecoland Manag 291: 199-208.), which is an influence that has been reported for various taxonomic groups (Franklin et al. 2005FRANKLIN E, MAGNUSSON WE & LUIZÃO FJ. 2005. Relative effects of biotic and abiotic factors on the composition of soil invertebrate communities in an Amazonian savanna. App Soil Ecol 29(3): 259-273., Bobrowiec et al. 2014BOBROWIEC PED, ROSA LDS, GAZARINI J & HAUGAASEN T. 2014. Phyllostomid bat assemblage structure in Amazonian flooded and unflooded forests. Biotropica 46(3): 312-321., Fiorillo 2020FIORILLO BF. 2020. Diversidade e efeitos da estrutura da vegetação sobre répteis Squamata em uma área de cerrado do Sudeste do Brasil: subsídios para o manejo de unidades de conservação (Doctoral dissertation, Universidade de São Paulo)., Peixoto et al. 2020PEIXOTO GM, DE FRAGA R, ARAÚJO MC, KAEFER IL & LIMA AP. 2020. Hierarchical effects of historical and environmental factors on lizard assemblages in the upper Madeira River, Brazilian Amazonia. PLoS ONE 15: 1-19.). Previous research has suggested that vegetation structure is not a good predictor of spatial distribution of species of Amazonian Ombrophylous Forest anuran assemblages, as other variables predictors, such as distance from water bodies, terrain slope, clay content and soil moisture (Menin et al. 2007MENIN M, LIMA AP, MAGNUSSON WE & WALDEZ F. 2007. Topographic and edaphic effects on the distribution of terrestrially reproducing anurans in Central Amazonia: Mesoscale spatial patterns. J Trop Ecol 23: 539-547., Condrati 2009CONDRATI LH. 2009. Padrões de distribuição e abundância de anuros em áreas ripárias e não ripárias de floresta de terra firme na Reserva Biológica do Uatumã - Amazônia Central (MSc Dissertation). Instituto Nacional de Pesquisas da Amazônia, Manaus, Brazil. (Unpublished)., Ribeiro et al. 2012RIBEIRO JW, LIMA AP & MAGNUSSON WE. 2012. The effect of riparian zones on species diversity of frogs in Amazonian forests. Copeia: 375-384.).

However, our study showed that variations in the species composition of anuran assemblages of Amazonian white-sand ecosystems were closely related to changes in the vegetation structure. Among the three vegetation types studied, the forested environments (riparian and non-riparian Campinarana) likely harbored all the species recorded. This higher species richness is because these environments have greater availability of reproductive sites and micro-habitats with adequate humidity and temperature ranges, thus increasing survival rates in the driest periods (Lieberman 1986LIEBERMAN SS. 1986. Ecology of the leaf litter herpetofauna of a Neotropical rain forest: La Selva, Costa Rica. Acta Zoo Mexi (nueva serie) 15: 1-72, Keller et al. 2009KELLER A, RÖDEL MO, LINSENMAIR KE & GRAFE TU. 2009. The importance of environmental heterogeneity for species diversity and assemblage structure in Bornean stream frogs. J Ani Ecol 78(2): 305-314., Lima et al. 2012LIMA AP, MAGNUSSON WE, MENIN M, ERDTMANN LK, RODRIGUES DDJ, KELLER C & HÖDL W. 2012. Guia de sapos da Reserva Adolpho Ducke-Amazônia Central.). Despite the predominance of sandy soils in the vegetation types studied (more than 84%), we found that the presence of clay in the soil influenced the composition of anuran assemblages. The soil in the Campinarana has a higher proportion of clay and a higher availability of nutrients (Damasco et al. 2013DAMASCO G, VICENTINI A, CASTILHO CV, PIMENTEL TP & NASCIMENTO HEM. 2013. Disentangling the role of edaphic variability, flooding regime and topography of Amazonian white-sand vegetation. J Veget Sci 24: 384-394.) than the other vegetation types, which also may explain the higher species richness recorded for. Furthermore, the positive correlation between amphibian diversity and abundance and clay soils can be explained by considering that other studies have found a relationship between this type of soils and the availability of water bodies. (Woinarski et al. 1999WOINARSKI JCZ, FISHER A & MILNE D. 1999. Distribution patterns of vertebrates in relation to an extensive rainfall gradient and variation in soil texture in the tropical savannas of the Northern Territory, Australia. J Trop Ecol 15(4): 381-398., Menin et al. 2007MENIN M, LIMA AP, MAGNUSSON WE & WALDEZ F. 2007. Topographic and edaphic effects on the distribution of terrestrially reproducing anurans in Central Amazonia: Mesoscale spatial patterns. J Trop Ecol 23: 539-547., Ferreira et al. 2018FERREIRA AS, JEHLE R, STOW AJ & LIMA AP. 2018. Soil and forest structure predicts large-scale patterns of occurrence and local abundance of a widespread Amazonian frog. PeerJ 6: e5424) that some anurans use for reproduction (Menin et al. 2011MENIN M, WALDEZ F & LIMA AP. 2011. Effects of environmental and spatial factors on the distribution of anuran species with aquatic reproduction in central Amazonia. The Herpetol J 21(4): 255-261.).

A pattern of hierarchical subgroups in the structure of assemblages may occur in areas with environmental limitations (Kodric-Brown & Brown 1993KODRIC-BROWN A & BROWN JH. 1993. Highly structured fish communities in Australian desert springs. Ecology 74(6): 1847-1855.). In Amazonian floodplain forests, only the species that are resistant to seasonal floods occur throughout the entire flooding gradient (Alvarenga et al. 2018ALVARENGA GC, RAMALHO EE, BACCARO FB, DA ROCHA DG, FERREIRA-FERREIRA J & DINELI BOBROWIEC PE. 2018. Spatial patterns of medium and large size mammal assemblages in várzea and terra firme forests, Central Amazonia, Brazil. PLoS ONE 13: 1-19., Ramalho et al. 2018RAMALHO WP, MACHADO IF & VIEIRA LJS. 2018. Do flood pulses structure amphibian communities in floodplain environments? Biotropica 50: 338-345.). This pattern, however, contrasts with the conclusions of Worthen (1996)WORTHEN WB. 1996. Community composition and nested-subset analyses: basic descriptors for community ecology. Oikos: 417-426., who asserted that high environmental variability in small environments is responsible for harboring different, specialized species, thus creating strong species-area relationships without necessarily forming a hierarchical-subset structure. We suggest that the main factor underlying the hierarchical pattern of anuran assemblage in white-sand ecosystems is the high interspecific variation in habitat requirements, given that more generalist species can be found in most environments, while more specialized species occur only in a subgroup of sites that suit the narrower habitat requirements of these species (Loo et al. 2002LOO SE, NALLY RM & QUINN G. 2002. An experimental examination of colonization as a generator of biotic nestedness. Oecologia 132(1): 118-124.). Our understanding about how environmental variation shapes diversity patterns within landscapes can be widened by exploring species-habitat questions. The types of white-sand vegetation form fragile landscapes that extend naturally as small islands within the Amazon biome (Adeney et al. 2016ADENEY JM, CHRISTENSEN, NL VICENTINI A & COHN-HAFT M. 2016. White-sand Ecosystems in Amazonia. Biotropica 48: 7-23., Vicentini 2016VICENTINI A. 2016. The Evolutionary History of Pagamea (Rubiaceae), a White-sand Specialist Lineage in Tropical South America. Biotropica 48: 58-69.). These unique habitats are highly relevant for species diversity, and harbor both endemic and rare species (Farroñay et al. 2019, Ferrão et al. 2019FERRÃO M, MORAVEC J, MORAES LJ, DE CARVALHO VT, GORDO M & LIMA AP. 2019. Rediscovery of Osteocephalus vilarsi (Anura: Hylidae): an overlooked but widespread Amazonian spiny-backed treefrog. PeerJ 7: e8160., Capurucho et al. 2013CAPURUCHO JMG, CORNELIUS C, BORGES SH, COHN-HAFT M, ALEIXO A, METZGER JP & RIBAS CC. 2013. Combining phylogeography and landscape genetics of Xenopipo atronitens (Aves: Pipridae), a white sand campina specialist, to understand Pleistocene landscape evolution in Amazonia. Biolog J Lin Soc 110(1): 60-76.).

The reduction in both species’ richness and abundance of individuals, in relation to the proportion of clay in the soil, is a proxy of distance from riparian areas in environments with tall forests (Menin et al. 2007MENIN M, LIMA AP, MAGNUSSON WE & WALDEZ F. 2007. Topographic and edaphic effects on the distribution of terrestrially reproducing anurans in Central Amazonia: Mesoscale spatial patterns. J Trop Ecol 23: 539-547., Rojas-Ahumada et al. 2012ROJAS-AHUMADA DP, LANDEIRO VL & MENIN M. 2012. Role of environmental and spatial processes in structuring anuran communities across a tropical rain forest. Biol J Linn Soc 37: 865-873.), and indicates that the availability of water is a limiting factor for distribution of anuran species. This is similar to the white-sand ecosystems in the Amazon, where the highest richness and abundance was found in the riparian Campinaranas, which are 1.5 m from the streams. We believe we have discovered which habitat requirements are key for structuring anuran assemblages in white-sand ecosystems; however, it is necessary to increase our knowledge regarding the dynamics of white-sand ecosystems and the species that inhabit them so as to better assess the threats that these fragile habitats may suffer. This is especially that case for the patch of white sand near Manaus, the largest city in the Amazon, which is growing rapidly and uses this sand for construction.

CONCLUSIONS

Our understanding about how environmental variation shapes diversity patterns within landscapes can be widened by exploring species-habitat questions. The different types of white-sand vegetation form fragile landscapes that extend naturally as small islands within the Amazon biome (Adeney et al. 2016ADENEY JM, CHRISTENSEN, NL VICENTINI A & COHN-HAFT M. 2016. White-sand Ecosystems in Amazonia. Biotropica 48: 7-23., Vicentini 2016VICENTINI A. 2016. The Evolutionary History of Pagamea (Rubiaceae), a White-sand Specialist Lineage in Tropical South America. Biotropica 48: 58-69.). These unique habitats are highly relevant for species diversity, and harbor both endemic and rare species (Farroñay et al. 2019, Ferrão et al. 2019FERRÃO M, MORAVEC J, MORAES LJ, DE CARVALHO VT, GORDO M & LIMA AP. 2019. Rediscovery of Osteocephalus vilarsi (Anura: Hylidae): an overlooked but widespread Amazonian spiny-backed treefrog. PeerJ 7: e8160.). In this study, we have explored the relationships between anuran spatial distribution and soil and vegetation characteristics in three types of white-sand vegetation in the Amazon. The pattern of hierarchical subsets of species found for the white-sand anuran assemblages was explained by both vegetation structure and proportion of clay in the soil. The reduction in both species’ richness and abundance of individuals, relative to the distance from riparian areas, indicates that the availability of water is a limiting factor for anuran species distribution in white-sand landscapes in the Amazon.

ACKNOWLEDGMENTS

This study was funded by Fundação de Amparo à Pesquisa do Estado do Amazonas (Edital No. 002/2018, Processo No. 062.00187/2019, Universal Amazonas call, funding for A. P. Lima). We are grateful for the logistical support provided by Programa de Pesquisas em Biodiversidade (PPBio) and the Centro de Estudos Integrados da Biodiversidade Amazônica (INCTCENBAM). We are also grateful to the many people involved in the different stages of the fieldwork. Coordenação de Aperfeiçoamento Pessoal de Nível Superior (CAPES) granted a scholarship to R.C.S.P. We would also like to thank the reviewers for their comments and suggestions, which greatly helped to improve the quality of the paper.

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Publication Dates

  • Publication in this collection
    26 Aug 2024
  • Date of issue
    2024

History

  • Received
    17 Mar 2024
  • Accepted
    23 Apr 2024
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