| MIcroSAtellite (MISA) |
http://pgrc.ipk-gatersleben.de/misa/; Thiel et al. (2003)THIEL, T.; MICHALEK, W.; VARSHNEY, R.K.; GRANER, A. Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.). Theoretical and Applied Genetics, V.106, n.3, p.411-422, 2003.
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| SSRFinder |
Gao et al. (2003)GAO, L.; TANG, J.; LI, H.; JIA, J. Analysis of microsatellites in major crops assessed by computational and experimental approaches. Molecular Breeding, V.12, n.3, p.245-261, 2003 apud VARSHNEY, R.K.; GRANER, A.; SORRELLS, M.E. Genic microsatellite markers in plants: features and applications. TRENDS in Biotechnology, V.23, n.1, p.48-55, 2005.
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| BuildSSR |
Rungis et al. (2004)RUNGIS, D.; BÉRUBÉ, Y.; ZHANG, J.; RALPH, S.; RITLAND, C.E.; ELLIS, B.E.; DOUGLAS, C.; BOHLMANN, J.; RITLAND, K. Robust simple sequence repeat markers for spruce (Picea spp.) from expressed sequence tags. Theoretical and Applied Genetics, V.109, n.6, p.1283-1294, 2004 apud VARSHNEY, R.K.; GRANER, A.; SORRELLS, M.E. Genic microsatellite markers in plants: features and applications. TRENDS in Biotechnology, V.23, n.1, p.48-55, 2005.
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| SSR Identification Tool (SSRIT) |
Kantety et al. (2002)KANTETY, R.V.; LA ROTA, M.; MATTHEWS, D.E.; SORRELLS, M.E. Data mining for simple sequence repeats in expressed sequence tags from barley, maize, rice, sorghum and wheat. Plant Molecular Biology, V.48, n.5-6, p.501-510, 2002 apud VARSHNEY, R.K.; GRANER, A.; SORRELLS, M.E. Genic microsatellite markers in plants: features and applications. TRENDS in Biotechnology, V.23, n.1, p.48-55, 2005.
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| Tandem Repeat Finder (TRF) |
Benson (1999)BENSON, G. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Research, V.27, n.2, p.573-580, 1999 apud VARSHNEY, R.K.; GRANER, A.; SORRELLS, M.E. Genic microsatellite markers in plants: features and applications. TRENDS in Biotechnology, V.23, n.1, p.48-55, 2005.
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| Tandem Repeat Occurrence Locator (TROLL) |
Castelo et al. (2002)CASTELO, A.T. ; MARTINS, W. ; GAO, G.R. TROLL - Tandem Repeat Occurrence Locator. Bioinformatics, V.18, n.4, p.634-636, 2002 apud VARSHNEY, R.K.; GRANER, A.; SORRELLS, M.E. Genic microsatellite markers in plants: features and applications. TRENDS in Biotechnology, V.23, n.1, p.48-55, 2005.
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| CUGIssr |
http://www.genome.clemson.edu/projects/ssr/
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| Sputnik |
http://abajian.net/sputnik/index.html
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| Modified Sputnik |
Morgante et al. (2002)MORGANTE, M.; HANAFEY, M.; POWELL, W. Microsatellites are preferentially present with nonrepetitive DNA in plant genomes. Nature Genetics, V.30, p.194-200, 2002 apud VARSHNEY, R.K.; GRANER, A.; SORRELLS, M.E. Genic microsatellite markers in plants: features and applications. TRENDS in Biotechnology, V.23, n.1, p.48-55, 2005.
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| Modified Sputnik II |
http://wheat.pw.usda.gov/ITMI/EST-SSR/LaRota/
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| SSRSEARCH |
ftp://ftp.gramene.org/pub/gramene/software/scripts/ssr.pl |
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