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Homologous recombination deficiency gene panel analysis results in synchronous endometrial and ovarian cancers

SUMMARY

OBJECTIVE:

The objective of this study was to analyze the genetic alterations of tumors within the scope of the homologous recombination deficiency gene panel in patients diagnosed with synchronous endometrial ovarian cancer who have been followed for over 5 years using next-generation sequencing.

METHODS:

DNA was isolated from the patient’s formalin-fixed, paraffin-embedded tissue blocks. Next-generation sequencing was performed using the Illumina capture-based sequencing method. Samples were sequenced using the Sophia HR Solution DNA Kit.

RESULTS:

Seven patients were included in this study. The ratios of likely pathogenic (LP)/pathogenic (P) somatic mutations in ATM (serine/threonine kinase or Ataxia-telangiectasia mutated gene), BRCA2 (breast cancer type 2 susceptibility gene), BARD1 (BRCA1 associated RING domain 1), TP53 (tumor protein p53), BIRP1 (BRCA1-interacting helicase 1 gene), PALB2 (partner and localizer of BRCA2), and CHECK2 were 21 (48.8%), 8 (18.6%), 5 (11.6%), 3 (6.9%), 2 (4.6%), 2 (4.6%), and 2 (4.6%), respectively, in endometrium, and the ratios of somatic mutations in ATM, BRCA2, TP53, BARD1, RAD54L (DNA repair/recombination protein like), BIRP1, and RAD51D (RAD51 recombinase paralog D) were 24 (60%), 6 (15%), 5 (12.5%), 2 (5%), 2 (5%), 1 (2.5%), and 1 (2.5%), respectively, in ovary. In endometrioid-synchronous endometrial ovarian cancer cases, P/LP mutations were observed in ATM and CHECK2 genes in endometrium and ATM, BRCA2, and TP53 genes in ovary. In two non-endometrioid-synchronous endometrial ovarian cancer cases, CHEK2 (checkpoint kinase 2) mutations were observed in endometrium and ATM and TP53 mutations in ovary, whereas in one case, P/LP mutations in ATM and TP53 genes were common in both tissues.

CONCLUSION:

Pathogenic variations confirming the diagnosis of synchronous endometrial ovarian cancer with genetic alterations were identified in all but one case. ATM gene mutation emerged as the most common alteration and has a potential association with a favorable prognosis.

KEYWORDS:
Synchronous neoplasm; Homologous recombination; Deficiency; ATM; Genes

INTRODUCTION

The most common concurrent malignancies in the female genital system are endometrial (EC) and ovarian tumors (OC), observed in 10% of OC cases and 5% of ECs11. Turashvili G, Gómez-Hidalgo NR, Flynn J, Gonen M, Leitao MM, Soslow RA, et al. Risk-based stratification of carcinomas concurrently involving the endometrium and ovary. Gynecol Oncol. 2019;152(1):38-45. https://doi.org/10.1016/j.ygyno.2018.10.033
https://doi.org/10.1016/j.ygyno.2018.10....
. The histopathological criteria have been established to determine whether this condition is metastatic (MC) or synchronous endometrial ovarian cancer (SEOC)22. Scully RE. Tumors of the ovary and maldeveloped gonads. Washington, DC: Armed Forces Institute of Pathology; 1979. p. 413.,33. Kurman RJ, Carcangiu ML, Herrington CS, Young RH. WHO classification of tumours of female reproductive organs. 4th ed. Lyon: WHO Press; 2014. p. 316.. However, relying solely on histopathological findings to differentiate between SEOC and MC can lead to misstaging, causing potential risks by mismanagement of patients. Given the different prognostic properties of MCs and SEOCs, accurate diagnoses are crucial for determining the treatment22. Scully RE. Tumors of the ovary and maldeveloped gonads. Washington, DC: Armed Forces Institute of Pathology; 1979. p. 413.,33. Kurman RJ, Carcangiu ML, Herrington CS, Young RH. WHO classification of tumours of female reproductive organs. 4th ed. Lyon: WHO Press; 2014. p. 316.. Detailed histopathological features, along with molecular investigations, are recommended for the diagnosis of SEOCs.

Clonality analyses through parallel sequencing methods were conducted for the differential diagnosis of MCs and SEOCs, identifying SEOCs exhibiting the same clonality44. Schultheis AM, Ng CK, Filippo MR, Piscuoglio S, Macedo GS, Gatius S, et al. Massively parallel sequencing-based clonality analysis of synchronous endometrioid endometrial and ovarian carcinomas. J Natl Cancer Inst. 2016;108(6):djv427. https://doi.org/10.1093/jnci/djv427
https://doi.org/10.1093/jnci/djv427...
,55. Anglesio MS, Wang YK, Maassen M, Horlings HM, Bashashati A, Senz J, et al. Synchronous endometrial and ovarian carcinomas: evidence of clonality. J Natl Cancer Inst. 2016;108(6):djv428. https://doi.org/10.1093/jnci/djv428
https://doi.org/10.1093/jnci/djv428...
,66. Reijnen C, Küsters-Vandevelde HVN, Ligtenberg MJL, Bulten J, Oosterwegel M, Snijders MPLM, et al. Molecular profiling identifies synchronous endometrial and ovarian cancers as metastatic endometrial cancer with favorable clinical outcome. Int J Cancer. 2020;147(2):478-89. https://doi.org/10.1002/ijc.32907
https://doi.org/10.1002/ijc.32907...
. Mutations in TP53 (tumor protein p53), PTEN (phosphatase and tensin homolog), POLE (DNA polymerase epsilon, catalytic subunit), PIK3CA (phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha), KRAS (KRAS proto-oncogene GTPase), ARID1A (AT-rich interaction domain 1A), FGFR2 (fibroblast growth factor receptor 2), and CTNNB1 (catenin beta1) genes, as well as immunohistochemical evaluation of DNA mismatch repair (MMR) protein expression, were performed in SEOCs44. Schultheis AM, Ng CK, Filippo MR, Piscuoglio S, Macedo GS, Gatius S, et al. Massively parallel sequencing-based clonality analysis of synchronous endometrioid endometrial and ovarian carcinomas. J Natl Cancer Inst. 2016;108(6):djv427. https://doi.org/10.1093/jnci/djv427
https://doi.org/10.1093/jnci/djv427...

5. Anglesio MS, Wang YK, Maassen M, Horlings HM, Bashashati A, Senz J, et al. Synchronous endometrial and ovarian carcinomas: evidence of clonality. J Natl Cancer Inst. 2016;108(6):djv428. https://doi.org/10.1093/jnci/djv428
https://doi.org/10.1093/jnci/djv428...

6. Reijnen C, Küsters-Vandevelde HVN, Ligtenberg MJL, Bulten J, Oosterwegel M, Snijders MPLM, et al. Molecular profiling identifies synchronous endometrial and ovarian cancers as metastatic endometrial cancer with favorable clinical outcome. Int J Cancer. 2020;147(2):478-89. https://doi.org/10.1002/ijc.32907
https://doi.org/10.1002/ijc.32907...

7. Yang L, Zhang L, Huang Q, Liu C, Qi L, Li L, et al. Combination of scoring criteria and whole exome sequencing analysis of synchronous endometrial and ovarian carcinomas. Int J Gynecol Cancer. 2018;28(4):704-12. https://doi.org/10.1097/IGC.0000000000001227
https://doi.org/10.1097/IGC.000000000000...
-88. Yoneoka Y, Yoshida H, Ishikawa M, Shimizu H, Uehara T, Murakami T, et al. Prognostic factors of synchronous endometrial and ovarian endometrioid carcinoma. J Gynecol Oncol. 2019;30(1):e7. https://doi.org/10.3802/jgo.2019.30.e7
https://doi.org/10.3802/jgo.2019.30.e7...
. MMR deficiency was observed in 28.3% of cases with not significantly associated with survival88. Yoneoka Y, Yoshida H, Ishikawa M, Shimizu H, Uehara T, Murakami T, et al. Prognostic factors of synchronous endometrial and ovarian endometrioid carcinoma. J Gynecol Oncol. 2019;30(1):e7. https://doi.org/10.3802/jgo.2019.30.e7
https://doi.org/10.3802/jgo.2019.30.e7...
.

Homologous recombination (HR) ensures the error-free repair of deoxyribonucleic acid (DNA) double-strand breaks (DBSs) during the DNA repair process. The inability to repair DNA-DBSs effectively using the HR repair pathway is defined as HR deficiency (HRD)99. Mangogna A, Munari G, Pepe F, Maffii E, Giampaolino P, Ricci G, et al. Homologous recombination deficiency in ovarian cancer: from the biological rationale to current diagnostic approaches. J Pers Med. 2023;13(2):284. https://doi.org/10.3390/jpm13020284
https://doi.org/10.3390/jpm13020284...
. HRD is a relative biomarker with both predictive and prognostic values in OCs. It is estimated that approximately 41–50% of OCs and 5–15.7% of ECs exhibit HRD1010. Denkert C, Romey M, Swedlund B, Hattesohl A, Teply-Szymanski J, Kommoss S, et al. Homologous recombination deficiency as an ovarian cancer biomarker in a real-world cohort: validation of decentralized genomic profiling. J Mol Diagn. 2022;24(12):1254-63. https://doi.org/10.1016/j.jmoldx.2022.09.004
https://doi.org/10.1016/j.jmoldx.2022.09...
,1111. Morgan RD, Clamp AR, Barnes BM, Timms K, Schlecht H, Yarram-Smith L, et al. Homologous recombination deficiency in newly diagnosed FIGO stage III/IV high-grade epithelial ovarian cancer: a multi-national observational study. Int J Gynecol Cancer. 2023;33(8):1253-9. https://doi.org/10.1136/ijgc-2022-004211
https://doi.org/10.1136/ijgc-2022-004211...
,1212. Ahsan MD, Levi SR, Webster EM, Harvey B, Cantillo E, Chapman-Davis E, et al. Homologous recombination deficiency gene mutations in uterine serous cancer. Presented at: ESMO Gynaecological Cancers Congress 2023; February 23-24, 2023; Barcelona, Spain. Abstract 22MO; 2023.,1313. Jonge MM, Auguste A, Wijk LM, Schouten PC, Meijers M, Ter Haar NT, et al. Frequent homologous recombination deficiency in high-grade endometrial carcinomas. Clin Cancer Res. 2019;25(3):1087-97. https://doi.org/10.1158/1078-0432.CCR-18-1443
https://doi.org/10.1158/1078-0432.CCR-18...
.

The HRD molecular phenotype represents a positive predictive biomarker for using of poly(ADP-ribose) polymerase (PARP) inhibitors and platinum-based chemotherapy in OCs. SEOCs show a good prognosis despite containing two separate malignancies, yet there are contradictions in the adjuvant treatment approaches for these patients. The goal was to analyze the genetic alterations within the scope of the HRD gene panel in SEOC cases who have been followed for over 5 years using next-generation sequencing (NGS). Our aim is to provide appropriate target-oriented treatment planning for these patients.

METHODS

Study design and characterization of participants

The medical records of 1,673 patients who underwent surgery for EC and OC between July 2005 and August 2022 were reviewed. According to histopathological criteria, 43 (2.57%) SEOC and 30 (1.79%) MC cases were identified. Among the patients with histopathologically confirmed SEOCs, seven patients with an overall survival (OS) of 5 years or more were included in the study.

Clinical characteristics, menopausal status, chief complaints of patients, presence of systemic disease history, serum CA-125 level, tumor size, surgical approach, and postoperative adjuvant treatment records and pathological findings of SEOCs were evaluated. Scully criteria were used to distinguish SEOCs from MCs who presented until 2014, and after 2014, the differential diagnosis of patients was made according to the WHO criteria22. Scully RE. Tumors of the ovary and maldeveloped gonads. Washington, DC: Armed Forces Institute of Pathology; 1979. p. 413.,33. Kurman RJ, Carcangiu ML, Herrington CS, Young RH. WHO classification of tumours of female reproductive organs. 4th ed. Lyon: WHO Press; 2014. p. 316.. Stages of OC and EC were determined according to the FIGO 2009 classification. Each patient was followed up every 3 months for the first 2 years, every 6 months for 2–5 years, and annually thereafter. Cases operated on in this institution but not followed there, as well as cases with additional malignancies in addition to SEOC, were excluded.

Sequencing analysis

DNA was isolated from formalin-fixed paraffin-embedded (FFPE) blocks using the Promega ReliaPrep FFPE gDNA Miniprep System kit and using Promega’s standard method recommended. NGS was performed using the Illumina capture-based sequencing method.

Samples were sequenced using the Sophia HR Solution DNA Kit. Panel genes included ATM, BARD1, BRCA1, BRCA2, BRIP1, CDK12 (cyclin-dependent kinase 12), CHEK1 (checkpoint kinase 1), CHEK2 (checkpoint kinase 2), FANCL (FA complementation group L), RAD51B (RAD51 paralog B), RAD51C, RAD51D (RAD51 recombinase paralog D), RAD54L (DNA repair/recombination protein like), PALB2 (partner and localizer of BRCA2), PPP2R2A, and TP53. Data analysis was performed using the Sophia DDM platform and in silico tools (https://franklin.genoox.com/clinical-db/; https://www.ncbi.nlm.nih.gov/clinvar/), and variants were classified according to the American College of Medical Genetics criteria. In our study, alterations with a variant allele frequency rate of 5% or higher in tumor tissue were evaluated.

Statistical analysis

The Statistical Package for Social Sciences, version 22.0 (SPSS Inc., Chicago, USA), a computer software package, was used for the statistical analysis of research data. For categorical variables, the number and percentage were provided, while for continuous variables, the mean±standard deviation and median values were presented.

Ethical approval

Ethical approval for the project with the protocol number KA21/502 was obtained from the Institutional Review Board of Başkent University Medical and Health Sciences Research Committee on January 13, 2022.

RESULTS

The average age of patients was 49 years, and their demographic and clinical characteristics are presented in Table 1. Four of them had endometrioid-type histopathology in both ovary and endometrium (EN-SEOC), while three showed non-endometrioid-type (NE-SEOC) (Table 2).

Table 1
Demographic, clinical, and histopathological findings of the patients.
Table 2
Clinical and molecular findings of patients.

According to the sequencing results, the frequencies of likely pathogenic (LP)/pathogenic (P) somatic mutations (SMs) in ATM, BRCA2, BARD1, TP53, BIRP1, PALB2, and CHECK2 genes were 21 (48.8%), 8 (18.6%), 5 (11.6%), 3 (6.9%), 2 (4.6%), 2 (4.6%), and 2 (4.6%), respectively, in endometrium and the ratios of LP/P SMs in ATM, BRCA2, TP53, BARD1, RAD54L, BIRP1, and RAD51D were 24 (60%), 6 (15%), 5 (12.5%), 2 (5%), 2 (5%), 1 (2.5%), and 1 (2.5%), respectively, in ovary (Table 3).

Table 3
Distribution of P/LP mutations observed in the endometrium and ovarian tissues in synchronous endometrial ovarian cancer cases.

In EN-SEOC cases, P/ LP mutations were observed in the ATM and CHECK2 genes in endometrium and in the ATM, BRCA2, and TP53 genes in ovary (Table 2). In addition to histopathological findings, different mutations in the genes identified through the analysis of tissues in all EN-SEOCs also supported the notion that they originated from different primers (Table 2). In NE-SEOC, in two cases with different histologies, CHEK2 mutations in endometrium and ATM and TP53 mutations in ovary supported the finding of two separate primary tumors with additional genetic changes besides histopathological criteria (Table 2). In the case showing the same serous histology in both ovary and endometrium in NE-SEOC, there were common P/ LP mutations in the ATM and TP53 genes. Despite being serous histology and grade 3, this patient showed an unexpectedly good prognosis (OS 101 months), although considered MC.

DISCUSSION

Women diagnosed with SEOC have a better prognosis compared to MCs. SEOC cases are evaluated as stage Ia, while in the MC group, they are considered as stage IIIa concerning EC or stage II concerning OC. Adjuvant therapy is not needed in stage Ia cases, while it is required in stage II and IIIa diseases22. Scully RE. Tumors of the ovary and maldeveloped gonads. Washington, DC: Armed Forces Institute of Pathology; 1979. p. 413.. In this study, the HRD gene panel was examined in seven SEOC cases and having survival rates exceeding 5 years. P/LP variations were identified, confirming SEOC diagnosis with genetic changes, except for one case.

In the analysis of single-gene mutations in SEOCs, the absence of common genetic changes indicates independent pathogenesis in each region, signifying they are SEOCs1414. Ishikawa M, Nakayama K, Nakamura K, Ono R, Yamashita H, Ishibashi T, et al. High frequency of POLE mutations in synchronous endometrial and ovarian carcinoma. Hum Pathol. 2019;85:92-100. https://doi.org/10.1016/j.humpath.2018.11.001
https://doi.org/10.1016/j.humpath.2018.1...
. However, as the analyses used to focus on a limited part of the genome, common alterations may not have been detected in at least some of the ECs and OCs. Recent genomic studies have described clonal relationships among endometrioid-type SEOCs44. Schultheis AM, Ng CK, Filippo MR, Piscuoglio S, Macedo GS, Gatius S, et al. Massively parallel sequencing-based clonality analysis of synchronous endometrioid endometrial and ovarian carcinomas. J Natl Cancer Inst. 2016;108(6):djv427. https://doi.org/10.1093/jnci/djv427
https://doi.org/10.1093/jnci/djv427...
,55. Anglesio MS, Wang YK, Maassen M, Horlings HM, Bashashati A, Senz J, et al. Synchronous endometrial and ovarian carcinomas: evidence of clonality. J Natl Cancer Inst. 2016;108(6):djv428. https://doi.org/10.1093/jnci/djv428
https://doi.org/10.1093/jnci/djv428...
,66. Reijnen C, Küsters-Vandevelde HVN, Ligtenberg MJL, Bulten J, Oosterwegel M, Snijders MPLM, et al. Molecular profiling identifies synchronous endometrial and ovarian cancers as metastatic endometrial cancer with favorable clinical outcome. Int J Cancer. 2020;147(2):478-89. https://doi.org/10.1002/ijc.32907
https://doi.org/10.1002/ijc.32907...
. Anglesio et al. explained that the presence of identical genetic characteristics in primary SEOC cases in both endometrium and ovary, based on histopathological criteria, is confined to areas that are physically accessible and compatible with the microenvironment, showing limited MC potential55. Anglesio MS, Wang YK, Maassen M, Horlings HM, Bashashati A, Senz J, et al. Synchronous endometrial and ovarian carcinomas: evidence of clonality. J Natl Cancer Inst. 2016;108(6):djv428. https://doi.org/10.1093/jnci/djv428
https://doi.org/10.1093/jnci/djv428...
.

Chao et al., examining 14 cases of EN-SEOC and two cases of NE-SEOC using massive parallel sequencing, found common SMs in 13 of the 14 EN-SEOC cases, contrary to histopathological criteria. In two NE-SEOC cases, they detected different SMs. In contrast to Chao’s findings, this study revealed distinct SMs in all four EN-SEOCs and in two out of three NE-SEOCs1515. Chao A, Wu RC, Jung SM, Lee YS, Chen SJ, Lu YL, et al. Implication of genomic characterization in synchronous endometrial and ovarian cancers of endometrioid histology. Gynecol Oncol. 2016;143(1):60-7. https://doi.org/10.1016/j.ygyno.2016.07.114
https://doi.org/10.1016/j.ygyno.2016.07....
.

Studies claiming that SEOCs sharing the same endometrioid histology generally result from MC spread from one organ to another due to their carrying the same clonality feature44. Schultheis AM, Ng CK, Filippo MR, Piscuoglio S, Macedo GS, Gatius S, et al. Massively parallel sequencing-based clonality analysis of synchronous endometrioid endometrial and ovarian carcinomas. J Natl Cancer Inst. 2016;108(6):djv427. https://doi.org/10.1093/jnci/djv427
https://doi.org/10.1093/jnci/djv427...
,55. Anglesio MS, Wang YK, Maassen M, Horlings HM, Bashashati A, Senz J, et al. Synchronous endometrial and ovarian carcinomas: evidence of clonality. J Natl Cancer Inst. 2016;108(6):djv428. https://doi.org/10.1093/jnci/djv428
https://doi.org/10.1093/jnci/djv428...
,1616. McConechy MK, Ding J, Senz J, Yang W, Melnyk N, Tone AA, et al. Ovarian and endometrial endometrioid carcinomas have distinct CTNNB1 and PTEN mutation profiles. Mod Pathol. 2014;27(1):128-34. https://doi.org/10.1038/modpathol.2013.107
https://doi.org/10.1038/modpathol.2013.1...
, alongside studies demonstrating molecular genetic changes occurring at different frequencies, suggesting different processes play a role in tumor formation or progression1717. Huang HN, Lin MC, Tseng LH, Chiang YC, Lin LI, Lin YF, et al. Ovarian and endometrial endometrioid adenocarcinomas have distinct profiles of microsatellite instability, PTEN expression, and ARID1A expression. Histopathology. 2015;66(4):517-28. https://doi.org/10.1111/his.12543
https://doi.org/10.1111/his.12543...
. In research directly comparing the mutation profiles of cases with endometrioid carcinoma of the ovary and endometrium, loss of expression in ARID1A, PTEN, and MSI-H is more commonly observed in the endometrium than in the ovary, while CTNNB1 mutation is statistically more prevalent in the ovary than in the endometrium1717. Huang HN, Lin MC, Tseng LH, Chiang YC, Lin LI, Lin YF, et al. Ovarian and endometrial endometrioid adenocarcinomas have distinct profiles of microsatellite instability, PTEN expression, and ARID1A expression. Histopathology. 2015;66(4):517-28. https://doi.org/10.1111/his.12543
https://doi.org/10.1111/his.12543...
. In our study, we detected a higher frequency of mutations in the CHEK2 gene in the endometrium and in the ATM gene in the ovary in endometrioid-type tumors.

Various parameters determining the prognosis in SEOC cases have been identified using clinical and histopathological features11. Turashvili G, Gómez-Hidalgo NR, Flynn J, Gonen M, Leitao MM, Soslow RA, et al. Risk-based stratification of carcinomas concurrently involving the endometrium and ovary. Gynecol Oncol. 2019;152(1):38-45. https://doi.org/10.1016/j.ygyno.2018.10.033
https://doi.org/10.1016/j.ygyno.2018.10....
. Although recent genomic studies have revealed that SEOC cases with different histopathologies are not independent primary tumors due to their clonal relationships, patients with these tumors often paradoxically exhibit good clinical outcomes. Researchers interpreted the paradoxically good prognosis of patients with clonally related SEOC as a result of “precursor escape.” In this hypothesis, precursor cells of EC spread beyond the uterus to reach the pelvis and eventually develop into OC under an increasing mutation burden1818. Weng CH, Wu RC, Chen SJ, Chen HC, Tan KT, Lee YS, et al. Molecular evidence for a clonal relationship between synchronous uterine endometrioid carcinoma and ovarian clear cell carcinoma: a new example of “precursor escape”? J Mol Med (Berl). 2021;99(7):959-66. https://doi.org/10.1007/s00109-021-02064-4
https://doi.org/10.1007/s00109-021-02064...
,1919. Soong TR, Howitt BE, Horowitz N, Nucci MR, Crum CP. The fallopian tube, “precursor escape” and narrowing the knowledge gap to the origins of high-grade serous carcinoma. Gynecol Oncol. 2019;152(2):426-33. https://doi.org/10.1016/j.ygyno.2018.11.033
https://doi.org/10.1016/j.ygyno.2018.11....
. This process would require initial genetic damage, leading to an intraepithelial lesion in the fallopian tube; cells from this lesion could escape and later manifest as advanced OC without an obvious tubal carcinoma in the pelvis. In our study, we explained the good prognosis observed in NE-SEOC cases with common mutations, despite unfavorable prognostic factors such as serous histology and grade 3 tumors, through the “precursor escape” hypothesis.

The presence of microsatellite instability and POLE mutations has been reported to be associated with a favorable prognosis in cases of SEOC88. Yoneoka Y, Yoshida H, Ishikawa M, Shimizu H, Uehara T, Murakami T, et al. Prognostic factors of synchronous endometrial and ovarian endometrioid carcinoma. J Gynecol Oncol. 2019;30(1):e7. https://doi.org/10.3802/jgo.2019.30.e7
https://doi.org/10.3802/jgo.2019.30.e7...
,1414. Ishikawa M, Nakayama K, Nakamura K, Ono R, Yamashita H, Ishibashi T, et al. High frequency of POLE mutations in synchronous endometrial and ovarian carcinoma. Hum Pathol. 2019;85:92-100. https://doi.org/10.1016/j.humpath.2018.11.001
https://doi.org/10.1016/j.humpath.2018.1...
. ATM gene mutation has been identified as an independent favorable prognostic criterion for ECs2020. Sun L, Wang RC, Zhang Q, Guo LL. ATM mutations as an independent prognostic factor and potential biomarker for immune checkpoint therapy in endometrial cancer. Pathol Res Pract. 2020;216(8):153032. https://doi.org/10.1016/j.prp.2020.153032
https://doi.org/10.1016/j.prp.2020.15303...
. It has been found that ATM kinase prevents malignancy in the endometrium through the stimulation of progesterone. T lymphocytes, especially cytotoxic lymphocytes, are often found in higher quantities in tumors with ATM mutations that infiltrate the tumor2020. Sun L, Wang RC, Zhang Q, Guo LL. ATM mutations as an independent prognostic factor and potential biomarker for immune checkpoint therapy in endometrial cancer. Pathol Res Pract. 2020;216(8):153032. https://doi.org/10.1016/j.prp.2020.153032
https://doi.org/10.1016/j.prp.2020.15303...
. Therefore, ATM mutations have been suggested as an independent prognostic factor and a potential biomarker for immune checkpoint therapy in EC2020. Sun L, Wang RC, Zhang Q, Guo LL. ATM mutations as an independent prognostic factor and potential biomarker for immune checkpoint therapy in endometrial cancer. Pathol Res Pract. 2020;216(8):153032. https://doi.org/10.1016/j.prp.2020.153032
https://doi.org/10.1016/j.prp.2020.15303...
. In our study, mutations in the ATM gene were more frequently detected than in other genes in the HRD panel, and all these patients had OS rates of more than 5 years. Although the number of patients in our study is limited, our findings are qualitative and supportive. Ishikawa et al. determined the frequency of SMs in TP 53 in SEOCs, reporting rates of 37.5% in endometrium and ovary1414. Ishikawa M, Nakayama K, Nakamura K, Ono R, Yamashita H, Ishibashi T, et al. High frequency of POLE mutations in synchronous endometrial and ovarian carcinoma. Hum Pathol. 2019;85:92-100. https://doi.org/10.1016/j.humpath.2018.11.001
https://doi.org/10.1016/j.humpath.2018.1...
. Furthermore, unlike Ishikawa, we observed a lower frequency of TP53 mutations in both endometrium (6.9%) and ovary (12.5%). Pathogenic mutations in the TP53 gene are associated with poor prognosis66. Reijnen C, Küsters-Vandevelde HVN, Ligtenberg MJL, Bulten J, Oosterwegel M, Snijders MPLM, et al. Molecular profiling identifies synchronous endometrial and ovarian cancers as metastatic endometrial cancer with favorable clinical outcome. Int J Cancer. 2020;147(2):478-89. https://doi.org/10.1002/ijc.32907
https://doi.org/10.1002/ijc.32907...
, and the lower frequency of mutations in this gene in our patients was considered to contribute to their good prognosis.

Patients with mutations in BRCA1/2 and other HR-DNA repair genes have achieved successful survival rates with targeted therapies using PARP inhibitors1111. Morgan RD, Clamp AR, Barnes BM, Timms K, Schlecht H, Yarram-Smith L, et al. Homologous recombination deficiency in newly diagnosed FIGO stage III/IV high-grade epithelial ovarian cancer: a multi-national observational study. Int J Gynecol Cancer. 2023;33(8):1253-9. https://doi.org/10.1136/ijgc-2022-004211
https://doi.org/10.1136/ijgc-2022-004211...
. Mutations in HR genes are not limited to serous histology but are also present in non-serous histologies1212. Ahsan MD, Levi SR, Webster EM, Harvey B, Cantillo E, Chapman-Davis E, et al. Homologous recombination deficiency gene mutations in uterine serous cancer. Presented at: ESMO Gynaecological Cancers Congress 2023; February 23-24, 2023; Barcelona, Spain. Abstract 22MO; 2023.. In our study, although EN-SEOCs in four cases, P/LP mutations were detected in ATM and CHECK2 genes in endometrium and in ATM, BRCA2, and TP53 genes in ovary, supporting this finding.

Upon retrospective evaluation of our study, the average OS of cases was 101 months, with four patients receiving both radiotherapy and chemotherapy and three patients receiving only chemotherapy. They were exposed to the adverse effects of these adjuvant treatments.

CONCLUSION

This study examined SMs in HRD panel genes among SEOC cases to identify patients suitable for targeted therapy. The ATM gene mutation emerged as the most prevalent alteration, with a potential link to a favorable prognosis. Nevertheless, given the limited case count, further validation through larger case series publications is warranted to confirm the accuracy of this observation.

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  • Funding:

    this work was supported by the Scientific Research Projects of Baskent University (Grant No: KA21/502).

Publication Dates

  • Publication in this collection
    30 Sept 2024
  • Date of issue
    2024

History

  • Received
    13 Apr 2024
  • Accepted
    15 July 2024
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